Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ACLV7A_RS05730 Genome accession   NZ_OZ217344
Coordinates   1174325..1175278 (-) Length   317 a.a.
NCBI ID   WP_411863833.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1169325..1180278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS05705 - 1170213..1170371 (-) 159 WP_025173180.1 hypothetical protein -
  ACLV7A_RS05710 - 1170383..1170478 (-) 96 Protein_1082 IS630 family transposase -
  ACLV7A_RS05715 (SMIE22_11290) prsA 1170784..1171722 (-) 939 WP_411863830.1 peptidylprolyl isomerase PrsA -
  ACLV7A_RS05720 (SMIE22_11300) - 1171789..1172502 (-) 714 WP_411863831.1 O-methyltransferase -
  ACLV7A_RS05725 (SMIE22_11310) pepF 1172504..1174306 (-) 1803 WP_411863832.1 oligoendopeptidase F Regulator
  ACLV7A_RS05730 (SMIE22_11320) coiA 1174325..1175278 (-) 954 WP_411863833.1 competence protein CoiA Machinery gene
  ACLV7A_RS05735 (SMIE22_11330) tehB 1175351..1176211 (-) 861 WP_411863834.1 SAM-dependent methyltransferase TehB -
  ACLV7A_RS05740 (SMIE22_11340) smpB 1176227..1176694 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  ACLV7A_RS05745 (SMIE22_11350) rnr 1176657..1179011 (-) 2355 WP_411863835.1 ribonuclease R -
  ACLV7A_RS05750 (SMIE22_11360) secG 1179112..1179345 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  ACLV7A_RS05755 rpmG 1179385..1179534 (-) 150 WP_001809104.1 50S ribosomal protein L33 -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 38094.55 Da        Isoelectric Point: 7.9188

>NTDB_id=1170291 ACLV7A_RS05730 WP_411863833.1 1174325..1175278(-) (coiA) [Streptococcus mitis isolate S. mitis E22]
MFVARDARGKLVNVLEDKLEKQAYTCPACGGQLRLRQGPSVRTHFAHKSLKDCDYSSENESPEHLANKESLYHWLKTEAE
VQLEYPLPELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSEGYQVLWLLGQKLWLKERLTRLQEGFLYFSQNMGF
YVWEVDKEKQVLRLKYLIHQDLRGKLYYQIKEFPYGQASLLEILRFPYKKQKISYFTVSQDKDICRYIQQQLYYQNPIWM
KEQAEAYQKGENLLTYGLKEWYPQIRPLVGEFCQIEQDLTRYYQYFQTYYQENPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1170291 ACLV7A_RS05730 WP_411863833.1 1174325..1175278(-) (coiA) [Streptococcus mitis isolate S. mitis E22]
ATGTTTGTTGCGAGAGATGCTAGGGGCAAATTGGTAAATGTGTTAGAGGATAAGCTTGAGAAGCAAGCCTACACCTGCCC
AGCTTGTGGAGGTCAGCTCCGTTTGCGTCAAGGACCAAGTGTCCGGACCCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTATTCCTCTGAAAATGAAAGTCCAGAACATCTGGCCAATAAGGAATCACTTTATCACTGGTTGAAAACAGAGGCTGAG
GTGCAATTAGAATACCCTCTTCCAGAGCTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTGGAAGTTCA
GTGTAGTCCCTTGCCTCAAAAGGTTCTTAAAGAGCGTAGTGAGGGTTATCGTAGTGAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTTTGGCTCAAGGAGCGTTTGACCCGTCTGCAAGAAGGTTTTCTTTATTTCAGTCAAAATATGGGCTTT
TATGTTTGGGAAGTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTCACCAAGACCTCCGTGGTAAACTCTA
TTATCAGATTAAGGAATTTCCCTATGGTCAAGCTAGTCTACTGGAGATATTACGTTTTCCCTATAAGAAACAAAAAATAT
CTTATTTTACAGTTTCTCAGGATAAGGACATCTGTCGCTATATTCAGCAACAACTCTATTATCAAAATCCTATTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATCTCCTGACTTATGGGCTAAAAGAATGGTATCCACAAATTCGACC
GCTAGTAGGTGAGTTTTGCCAAATTGAGCAAGATTTGACTCGCTATTATCAGTATTTTCAAACCTATTATCAAGAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

92.429

100

0.924

  coiA Streptococcus pneumoniae TIGR4

90.221

100

0.902

  coiA Streptococcus pneumoniae Rx1

90.221

100

0.902

  coiA Streptococcus pneumoniae D39

90.221

100

0.902

  coiA Streptococcus pneumoniae R6

90.221

100

0.902

  coiA Lactococcus lactis subsp. cremoris KW2

43.478

100

0.442


Multiple sequence alignment