Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   ACLV7Z_RS02315 Genome accession   NZ_OZ217343
Coordinates   428508..429167 (-) Length   219 a.a.
NCBI ID   WP_071478877.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 423508..434167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS02285 (SMIG22_04450) - 423688..424287 (+) 600 WP_218774149.1 phosphoribosylanthranilate isomerase -
  ACLV7Z_RS02290 (SMIG22_04460) trpB 424265..425488 (+) 1224 WP_218774148.1 tryptophan synthase subunit beta -
  ACLV7Z_RS02295 (SMIG22_04470) trpA 425481..426257 (+) 777 WP_218774147.1 tryptophan synthase subunit alpha -
  ACLV7Z_RS02300 - 426229..426330 (-) 102 Protein_399 prepilin peptidase -
  ACLV7Z_RS02305 (SMIG22_04480) - 426559..427290 (+) 732 WP_071478875.1 hypothetical protein -
  ACLV7Z_RS02310 (SMIG22_04490) - 427305..428456 (+) 1152 WP_130886591.1 XRE family transcriptional regulator -
  ACLV7Z_RS02315 (SMIG22_04500) cclA/cilC 428508..429167 (-) 660 WP_071478877.1 prepilin peptidase Machinery gene
  ACLV7Z_RS02320 (SMIG22_04510) - 429237..429692 (+) 456 WP_218774146.1 GNAT family N-acetyltransferase -
  ACLV7Z_RS02325 (SMIG22_04520) - 429815..430993 (-) 1179 WP_218774145.1 ROK family transcriptional regulator -
  ACLV7Z_RS02330 (SMIG22_04530) - 431399..432295 (+) 897 WP_164226077.1 WecB/TagA/CpsF family glycosyltransferase -
  ACLV7Z_RS02335 (SMIG22_04540) - 432310..432627 (+) 318 WP_001151646.1 PTS sugar transporter subunit IIB -
  ACLV7Z_RS02340 (SMIG22_04550) - 432644..432961 (+) 318 WP_050239156.1 PTS lactose/cellobiose transporter subunit IIA -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24951.23 Da        Isoelectric Point: 7.5762

>NTDB_id=1170193 ACLV7Z_RS02315 WP_071478877.1 428508..429167(-) (cclA/cilC) [Streptococcus mitis isolate S. mitis G22]
MIDFYFFLVGSILASFLGLVIDRFPEQSIIQPASHCDSCQTRLRPLDLIPILSQVLNRFRCRYCKAPYPIWYALFELGLG
LLFLLYSWELLSLSQVILITAGLTLGIYDFRHQEYPLLVWMTFHLILIACSGWNLVMVFFLVLGIVAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASTMGILAFLLQKKKERLPFVPFLLLAACVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1170193 ACLV7Z_RS02315 WP_071478877.1 428508..429167(-) (cclA/cilC) [Streptococcus mitis isolate S. mitis G22]
ATGATTGATTTTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTTATTGACCGTTTTCCTGAGCA
ATCCATTATCCAACCTGCTAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCTATTCTCTCGC
AGGTGCTCAATCGCTTTCGCTGTCGCTACTGCAAGGCTCCTTATCCTATTTGGTATGCCCTCTTTGAACTAGGCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGAATTACTTTCCTTGAGTCAAGTCATCCTAATCACTGCTGGTTTGACCTTGGGCAT
CTACGACTTTCGCCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTAATAGCCTGCTCTGGCTGGA
ATCTAGTCATGGTCTTCTTCCTTGTCCTTGGAATTGTGGCTCATTTTATCGATATCCGCATGGGCGCAGGGGATTTTCTC
TTTCTAGCTTCTTGTGCTCTCGTCTTTAGTGTGACCGAATTACTCATCTTGATTCAGTTTGCTTCTACGATGGGAATTCT
AGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTTGTGCCTTTCCTCTTACTCGCTGCTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

94.064

100

0.941

  cclA/cilC Streptococcus pneumoniae D39

94.064

100

0.941

  cclA/cilC Streptococcus pneumoniae R6

94.064

100

0.941

  cclA/cilC Streptococcus mitis SK321

91.781

100

0.918

  cclA/cilC Streptococcus pneumoniae TIGR4

89.954

100

0.9

  cclA/cilC Streptococcus mitis NCTC 12261

88.128

100

0.881


Multiple sequence alignment