Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ACLV7Z_RS01195 Genome accession   NZ_OZ217343
Coordinates   225713..226126 (+) Length   137 a.a.
NCBI ID   WP_218774874.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 220713..231126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS01155 (SMIG22_02260) - 220768..221826 (+) 1059 WP_004257473.1 zinc-dependent alcohol dehydrogenase family protein -
  ACLV7Z_RS01160 (SMIG22_02270) - 221977..222342 (+) 366 WP_000286413.1 DUF1033 family protein -
  ACLV7Z_RS01165 (SMIG22_02280) comGA/cglA/cilD 222419..223360 (+) 942 WP_218774872.1 competence type IV pilus ATPase ComGA Machinery gene
  ACLV7Z_RS01170 (SMIG22_02290) comGB/cglB 223308..224324 (+) 1017 WP_218774887.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACLV7Z_RS01175 (SMIG22_02300) comGC/cglC 224326..224649 (+) 324 WP_000738641.1 comG operon protein ComGC Machinery gene
  ACLV7Z_RS01180 (SMIG22_02310) comGD/cglD 224612..225046 (+) 435 WP_033628889.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACLV7Z_RS01185 (SMIG22_02320) comGE/cglE 225009..225311 (+) 303 WP_071478895.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACLV7Z_RS01190 (SMIG22_02330) comGF/cglF 225274..225735 (+) 462 WP_218774873.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACLV7Z_RS01195 (SMIG22_02340) comGG/cglG 225713..226126 (+) 414 WP_218774874.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACLV7Z_RS01200 (SMIG22_02350) - 226159..226746 (+) 588 WP_218774875.1 class I SAM-dependent methyltransferase -
  ACLV7Z_RS01205 (SMIG22_02360) comYH 226807..227760 (+) 954 WP_218774876.1 class I SAM-dependent methyltransferase Machinery gene
  ACLV7Z_RS01210 (SMIG22_02370) - 227810..229000 (+) 1191 WP_173306883.1 acetate kinase -
  ACLV7Z_RS01215 (SMIG22_02380) rnpA 229148..229519 (+) 372 WP_000739243.1 ribonuclease P protein component -
  ACLV7Z_RS01220 (SMIG22_02390) - 229494..230318 (+) 825 WP_218774877.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15958.44 Da        Isoelectric Point: 10.3385

>NTDB_id=1170173 ACLV7Z_RS01195 WP_218774874.1 225713..226126(+) (comGG/cglG) [Streptococcus mitis isolate S. mitis G22]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQIFNLGQVSYQNKK
TSLVTRVRTPKSQYEFIFPSVKIKEEKRDKKEEVVTDSSNQAEKKKSEEKVEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1170173 ACLV7Z_RS01195 WP_218774874.1 225713..226126(+) (comGG/cglG) [Streptococcus mitis isolate S. mitis G22]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCTTATATGCAGTCACCATGGCAGCCATTTTTAGCCTTTTGTTACA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTACGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGATCTTTAATCTGGGTCAGGTGAGCTATCAAAATAAGAAA
ACAAGCTTGGTGACAAGGGTTCGTACGCCTAAGAGCCAATATGAATTCATCTTTCCTTCCGTAAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGTAACTGATTCAAGTAATCAAGCAGAGAAGAAAAAATCAGAAGAGAAGGTCGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

91.971

100

0.92

  comGG/cglG Streptococcus mitis NCTC 12261

94.262

89.051

0.839

  comGG/cglG Streptococcus pneumoniae Rx1

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae D39

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae R6

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae TIGR4

94.017

85.401

0.803


Multiple sequence alignment