Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ACLV7Q_RS10240 Genome accession   NZ_OZ217341
Coordinates   2140954..2141712 (+) Length   252 a.a.
NCBI ID   WP_218757898.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2135954..2146712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS10210 (SMIC22_20200) comE 2136549..2137301 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  ACLV7Q_RS10215 (SMIC22_20210) comD/comD1 2137298..2138623 (-) 1326 WP_218757900.1 GHKL domain-containing protein Regulator
  ACLV7Q_RS10220 (SMIC22_20220) comC/comC1 2138644..2138769 (-) 126 WP_218757899.1 competence-stimulating peptide ComC Regulator
  ACLV7Q_RS10230 (SMIC22_20240) rlmH 2139052..2139531 (-) 480 WP_084367488.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACLV7Q_RS10235 (SMIC22_20250) htrA 2139715..2140896 (+) 1182 WP_176139267.1 S1C family serine protease Regulator
  ACLV7Q_RS10240 (SMIC22_20260) spo0J 2140954..2141712 (+) 759 WP_218757898.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28992.33 Da        Isoelectric Point: 6.7506

>NTDB_id=1170078 ACLV7Q_RS10240 WP_218757898.1 2140954..2141712(+) (spo0J) [Streptococcus mitis isolate S. mitis C22]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGIIQPIIVRQSPVIGYEILAGERRYLASLLAGLTSIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIANKMGKSRPYISNSIRLLSLPYAILSEVESGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTDHFIQNEEEQLKKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=1170078 ACLV7Q_RS10240 WP_218757898.1 2140954..2141712(+) (spo0J) [Streptococcus mitis isolate S. mitis C22]
ATGGAAAAATTTGAAATGATTTCTATCACGGATATACAAAAAAATCCCTATCAACCTCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGTATCATTCAACCGATTATTGTTCGTCAATCTCCTGTAATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCTGGCTTCACTTTTAGCTGGTCTAACATCTATCCCCGCTGTTGTTAAACAA
CTTTCAGACCAAGAAATGATGGTCCAGTCCATCATTGAAAATTTACAAAGAGAAAATTTAAATCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTTACCCATGCTGAAATTGCAAATAAAATGGGCAAGTCTCGTCCTTATATCA
GCAACTCCATTCGTTTGCTTTCCTTGCCATATGCTATCCTATCAGAAGTAGAAAGTGGCAAACTATCACAAGCCCATGCA
CGTTCTCTAGTTGGGTTGAATAAGGAACAACAAGACTATTTCTTTCAACGAATTATAGAAGAAGACATTTCTGTAAGAAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTGATCATTTCATACAAAATGAAGAAGAGCAGT
TAAAAAAACTACTCGGATTAGATGTAGAAATCAAATTGTCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATACAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(147-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment