Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACLV7Q_RS10075 Genome accession   NZ_OZ217341
Coordinates   2108936..2109598 (-) Length   220 a.a.
NCBI ID   WP_050224209.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103936..2114598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS10050 (SMIC22_19890) - 2104086..2104352 (-) 267 WP_001278160.1 Veg family protein -
  ACLV7Q_RS10055 (SMIC22_19900) dnaB 2104354..2105706 (-) 1353 WP_050142692.1 replicative DNA helicase -
  ACLV7Q_RS10060 (SMIC22_19910) rplI 2105750..2106202 (-) 453 WP_000864214.1 50S ribosomal protein L9 -
  ACLV7Q_RS10065 (SMIC22_19920) - 2106199..2108172 (-) 1974 WP_175880402.1 DHH family phosphoesterase -
  ACLV7Q_RS10070 (SMIC22_19930) hpf 2108308..2108856 (-) 549 WP_050142688.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACLV7Q_RS10075 (SMIC22_19940) comFC/cflB 2108936..2109598 (-) 663 WP_050224209.1 ComF family protein Machinery gene
  ACLV7Q_RS10080 (SMIC22_19950) comFA/cflA 2109595..2110893 (-) 1299 WP_218757916.1 DEAD/DEAH box helicase Machinery gene
  ACLV7Q_RS10085 (SMIC22_19960) - 2110949..2111584 (+) 636 WP_050242837.1 YigZ family protein -
  ACLV7Q_RS10090 - 2111681..2111773 (+) 93 Protein_1946 PH domain-containing protein -
  ACLV7Q_RS10095 (SMIC22_19970) cysK 2111870..2112796 (+) 927 WP_000029881.1 cysteine synthase A -
  ACLV7Q_RS10100 (SMIC22_19980) tsf 2112918..2113958 (-) 1041 WP_050391223.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25265.21 Da        Isoelectric Point: 7.7118

>NTDB_id=1170072 ACLV7Q_RS10075 WP_050224209.1 2108936..2109598(-) (comFC/cflB) [Streptococcus mitis isolate S. mitis C22]
MKCLLCGQIMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKIGLSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSAELKKYKEYQFVVIPLSPDRYANRGFNQVESLVEAAGFEYLDLLEKREERASSS
KNRSERLATELPFFIKSGVRIPKKILIIDDIYTTGTTINRVKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1170072 ACLV7Q_RS10075 WP_050224209.1 2108936..2109598(-) (comFC/cflB) [Streptococcus mitis isolate S. mitis C22]
ATGAAGTGCTTGTTATGTGGGCAGATTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGATTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAATAGGATTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGGGATTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGC
GGAGTTAAAAAAGTACAAAGAGTATCAATTTGTTGTCATTCCCCTAAGTCCTGATAGATATGCTAACAGAGGATTTAATC
AGGTTGAGAGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGCGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCCGCATTCCTAAGAAAATCCTAAT
TATAGATGATATTTATACTACAGGAACAACTATAAATCGTGTGAAGAAACTGCTGGAAGAAGCTGGTGCTGAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

95.455

100

0.955
  comFC/cflB Streptococcus pneumoniae Rx1

95

100

0.95
  comFC/cflB Streptococcus pneumoniae D39

95

100

0.95
  comFC/cflB Streptococcus pneumoniae R6

95

100

0.95
  comFC/cflB Streptococcus mitis NCTC 12261

90

100

0.9
  comFC/cflB Streptococcus mitis SK321

88.636

100

0.886

Multiple sequence alignment