Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ACLV7Q_RS08130 Genome accession   NZ_OZ217341
Coordinates   1680875..1681924 (-) Length   349 a.a.
NCBI ID   WP_218757140.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1675875..1686924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS08100 (SMIC22_15930) blpC 1677220..1677375 (+) 156 WP_218757135.1 quorum-sensing system pheromone BlpC -
  ACLV7Q_RS08105 (SMIC22_15940) - 1677417..1678757 (-) 1341 WP_218757136.1 sensor histidine kinase -
  ACLV7Q_RS08110 (SMIC22_15950) comE/blpR 1678771..1679508 (-) 738 WP_218757137.1 response regulator transcription factor Regulator
  ACLV7Q_RS08115 (SMIC22_15960) - 1679513..1679851 (-) 339 WP_218757138.1 LytTR family DNA-binding domain-containing protein -
  ACLV7Q_RS08120 (SMIC22_15970) - 1680210..1680461 (+) 252 WP_001130045.1 hypothetical protein -
  ACLV7Q_RS08125 (SMIC22_15980) - 1680490..1680813 (+) 324 WP_218757139.1 helicase BlpT -
  ACLV7Q_RS08130 (SMIC22_15990) pptB 1680875..1681924 (-) 1050 WP_218757140.1 ABC transporter permease Regulator
  ACLV7Q_RS08135 (SMIC22_16000) pptA 1681921..1682652 (-) 732 WP_023940790.1 ABC transporter ATP-binding protein Regulator
  ACLV7Q_RS08140 (SMIC22_16010) - 1682720..1683130 (+) 411 WP_218757141.1 HIT family protein -
  ACLV7Q_RS08145 (SMIC22_16020) - 1683140..1683427 (+) 288 WP_049487998.1 hypothetical protein -
  ACLV7Q_RS08150 (SMIC22_16030) dnaJ 1683824..1684963 (-) 1140 WP_112444466.1 molecular chaperone DnaJ -
  ACLV7Q_RS08155 (SMIC22_16040) - 1685233..1685688 (-) 456 WP_050242236.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40415.62 Da        Isoelectric Point: 10.1177

>NTDB_id=1170056 ACLV7Q_RS08130 WP_218757140.1 1680875..1681924(-) (pptB) [Streptococcus mitis isolate S. mitis C22]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLVYVLLVGVGKYFLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKVVQKVPGKIWQNLYLRSYLRNGALFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQAVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMLD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1170056 ACLV7Q_RS08130 WP_218757140.1 1680875..1681924(-) (pptB) [Streptococcus mitis isolate S. mitis C22]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTTCTGCTTGTTCTGCTGGGCTTTCTAGCCTACCAGTACAGTCAACTTTTACAGCATTTTCCTGAAAACC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACCTCTGTTTTACTGTTGCTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTCGGAGAAGAGGAAATCAAACTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTCCAGACCCTTTTCTTGCTTTTATTTGCGCCCTTATTTTTAGCCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTACTTTTAGTGGGGGTAGGTAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGCAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
AAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCTTATCTGGACTTTATCCTAAAGGTTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTTTATCTGCGTTCTTATTTGCGAAATGGAGCCCTCTTTGCTCTCAGCCTTCGCCTGCTCTTGCTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTGGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCACGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCACTGGACAAGGGGCAAAAGGAAAAAG
GTTTACAGGCTGTAGTTCGAGGATTGACTAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTGCTGGGTGCAGGTTTGGTTTTACTAGTCTTGTACTTACCTTATCAAGTAAAACGTCAGAT
GCTGGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

48.148

100

0.484

  pptB Streptococcus thermophilus LMD-9

47.293

100

0.476


Multiple sequence alignment