Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACLV7Q_RS01870 Genome accession   NZ_OZ217341
Coordinates   353583..355079 (+) Length   498 a.a.
NCBI ID   WP_218757338.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 348583..360079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS01860 (SMIC22_03520) - 350153..351319 (-) 1167 WP_218757336.1 IS30 family transposase -
  ACLV7Q_RS01865 (SMIC22_03530) amiA3 351537..353516 (+) 1980 WP_218757337.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Q_RS01870 (SMIC22_03540) amiC 353583..355079 (+) 1497 WP_218757338.1 ABC transporter permease Regulator
  ACLV7Q_RS01875 (SMIC22_03550) amiD 355079..356005 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7Q_RS01880 (SMIC22_03560) amiE 356014..357081 (+) 1068 WP_218757339.1 ABC transporter ATP-binding protein Regulator
  ACLV7Q_RS01885 (SMIC22_03570) amiF 357092..358018 (+) 927 WP_042900321.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7Q_RS01890 (SMIC22_03580) - 358471..359448 (+) 978 WP_218757340.1 ABC transporter substrate binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55590.11 Da        Isoelectric Point: 9.3559

>NTDB_id=1170024 ACLV7Q_RS01870 WP_218757338.1 353583..355079(+) (amiC) [Streptococcus mitis isolate S. mitis C22]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANAVNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAIAGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGA
LTFLMALPTIALVYIVRLLGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1170024 ACLV7Q_RS01870 WP_218757338.1 353583..355079(+) (amiC) [Streptococcus mitis isolate S. mitis C22]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAGGCAAATGCGGTCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTTTATGCTACTCGTGAAATTCCCATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGTTACCTT
CGCTTCGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGTACTAAACATAAATATCTCTTGTACTTCAACAG
TCAGTTCCCATTTGTGCATCAAAACTTTGTGAATATCAATTTAGGTGACTCTTATCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTTCTCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCGAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTGCTGGTTTGATTGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCCATGGCTCGCTTCAAGAACACTTGGATCGATAGCTTCTCAACAGGGGCT
TTGACCTTCTTGATGGCACTTCCAACAATCGCCCTTGTTTATATTGTTCGATTGCTTGGTTCCTCAATTGGTTTACCAGA
TTCATTCCCTATCTTAGGGGCTGGAGATTGGCGTTCTTACGTTTTACCGGCAGTAATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCTGTTAT
CGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTAGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

76.908

100

0.769
  amiC Streptococcus thermophilus LMD-9

76.506

100

0.765

Multiple sequence alignment