Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACLV7Q_RS01885 Genome accession   NZ_OZ217341
Coordinates   357092..358018 (+) Length   308 a.a.
NCBI ID   WP_042900321.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 352092..363018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS01870 (SMIC22_03540) amiC 353583..355079 (+) 1497 WP_218757338.1 ABC transporter permease Regulator
  ACLV7Q_RS01875 (SMIC22_03550) amiD 355079..356005 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7Q_RS01880 (SMIC22_03560) amiE 356014..357081 (+) 1068 WP_218757339.1 ABC transporter ATP-binding protein Regulator
  ACLV7Q_RS01885 (SMIC22_03570) amiF 357092..358018 (+) 927 WP_042900321.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7Q_RS01890 (SMIC22_03580) - 358471..359448 (+) 978 WP_218757340.1 ABC transporter substrate binding protein -
  ACLV7Q_RS01895 (SMIC22_03590) - 359460..360353 (+) 894 WP_020903094.1 ABC transporter permease -
  ACLV7Q_RS01900 (SMIC22_03600) - 360366..361169 (+) 804 WP_218757341.1 ABC transporter ATP-binding protein -
  ACLV7Q_RS01905 (SMIC22_03610) - 361495..361743 (+) 249 WP_000364990.1 YneF family protein -
  ACLV7Q_RS01910 (SMIC22_03620) racE 361947..362741 (+) 795 WP_218757342.1 glutamate racemase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34791.83 Da        Isoelectric Point: 6.5107

>NTDB_id=1170027 ACLV7Q_RS01885 WP_042900321.1 357092..358018(+) (amiF) [Streptococcus mitis isolate S. mitis C22]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170027 ACLV7Q_RS01885 WP_042900321.1 357092..358018(+) (amiF) [Streptococcus mitis isolate S. mitis C22]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CGATAATCGGTCTAAATGATACAAGCAATGGAGATATCATTTTTGAGGGTCAAAAGATTAATGGAAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCTGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCGGAAGGTCTTTACAATCACCATTTGTTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTAAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGCTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCTTTGGTCATGCAACCAGATTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTTCGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCATCCATATACTCAAGCCTTACTTTCAGCGGTACCAATTCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGACAAACCATCCATGGTTGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTGGCACGTTATCAACAAGGACTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment