Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACLV7Q_RS01875 Genome accession   NZ_OZ217341
Coordinates   355079..356005 (+) Length   308 a.a.
NCBI ID   WP_000103703.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 350079..361005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS01860 (SMIC22_03520) - 350153..351319 (-) 1167 WP_218757336.1 IS30 family transposase -
  ACLV7Q_RS01865 (SMIC22_03530) amiA3 351537..353516 (+) 1980 WP_218757337.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Q_RS01870 (SMIC22_03540) amiC 353583..355079 (+) 1497 WP_218757338.1 ABC transporter permease Regulator
  ACLV7Q_RS01875 (SMIC22_03550) amiD 355079..356005 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7Q_RS01880 (SMIC22_03560) amiE 356014..357081 (+) 1068 WP_218757339.1 ABC transporter ATP-binding protein Regulator
  ACLV7Q_RS01885 (SMIC22_03570) amiF 357092..358018 (+) 927 WP_042900321.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7Q_RS01890 (SMIC22_03580) - 358471..359448 (+) 978 WP_218757340.1 ABC transporter substrate binding protein -
  ACLV7Q_RS01895 (SMIC22_03590) - 359460..360353 (+) 894 WP_020903094.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34642.72 Da        Isoelectric Point: 9.8044

>NTDB_id=1170025 ACLV7Q_RS01875 WP_000103703.1 355079..356005(+) (amiD) [Streptococcus mitis isolate S. mitis C22]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170025 ACLV7Q_RS01875 WP_000103703.1 355079..356005(+) (amiD) [Streptococcus mitis isolate S. mitis C22]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAGTCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTTTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTGACGACATGGATTGGGATTGCTTTCAT
GATCCGTGTGCAAATCTTGCGTTACCGTGATTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment