Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACLV7H_RS04560 Genome accession   NZ_OZ217340
Coordinates   855106..856062 (+) Length   318 a.a.
NCBI ID   WP_411866488.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 850106..861062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS04545 (SORA22_09100) smpB 852363..852830 (+) 468 WP_001051742.1 SsrA-binding protein SmpB -
  ACLV7H_RS04550 (SORA22_09110) tehB 852845..853705 (+) 861 WP_000413062.1 SAM-dependent methyltransferase TehB -
  ACLV7H_RS04555 (SORA22_09120) - 853881..855029 (+) 1149 WP_411866487.1 hypothetical protein -
  ACLV7H_RS04560 (SORA22_09130) coiA 855106..856062 (+) 957 WP_411866488.1 competence protein CoiA Machinery gene
  ACLV7H_RS04565 (SORA22_09140) pepF 856081..857883 (+) 1803 WP_411866489.1 oligoendopeptidase F Regulator
  ACLV7H_RS04570 (SORA22_09150) - 857885..858598 (+) 714 WP_000230408.1 O-methyltransferase -
  ACLV7H_RS04575 (SORA22_09160) prsA 858666..859607 (+) 942 WP_000728083.1 peptidylprolyl isomerase PrsA -
  ACLV7H_RS04580 (SORA22_09170) ftsW 859796..861019 (+) 1224 WP_000703343.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37864.36 Da        Isoelectric Point: 9.2662

>NTDB_id=1169958 ACLV7H_RS04560 WP_411866488.1 855106..856062(+) (coiA) [Streptococcus oralis isolate S. oralis A22]
MFVARDAKGNLVNALEKDVTKQAYTCPACGGGLRLRQGQSIRTHFAHERLRDCIAIFENESPEHLGNKEALYHWVKKDNQ
VALEYSLPEIQQIADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDFKKQVLRLKYLLHQDLRGKLHFQVKEFPYGQGNLLEILRFPYQKQKLPRFAVVQDSTICHYIRQQLYYQTPYWM
KKQEEAYYQGDNLLNLQLDDWYPQVRPIESGDFLQIETDLTSYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1169958 ACLV7H_RS04560 WP_411866488.1 855106..856062(+) (coiA) [Streptococcus oralis isolate S. oralis A22]
ATGTTTGTAGCCAGAGATGCCAAGGGGAATTTGGTGAATGCCCTCGAAAAAGATGTGACCAAGCAAGCTTATACTTGTCC
AGCCTGTGGGGGCGGGCTACGGTTACGCCAAGGACAGAGTATTCGAACGCACTTTGCCCATGAAAGGTTAAGAGATTGCA
TCGCTATATTTGAGAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGCCCTTTATCATTGGGTCAAGAAGGACAATCAA
GTCGCCTTAGAATATAGTCTGCCCGAGATTCAGCAGATAGCAGATGTTCTCGTCAATGAGAAACTAGCTCTGGAGGTTCA
GTGCAGTCCCTTGTCTCAAAAGCTTTTAGGTGATAGAAGTCAAGGATACCGTAGCCAGGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGATTAACACAACTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGTTTC
TATGTTTGGGAACTAGATTTCAAAAAGCAAGTTTTGAGACTCAAATATCTTCTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAGGAATTTCCCTATGGTCAAGGAAATCTCTTGGAAATTCTACGATTTCCTTATCAAAAACAAAAACTGC
CTCGTTTTGCAGTTGTGCAAGATTCCACTATCTGTCACTACATTCGCCAGCAGTTGTACTACCAAACGCCCTACTGGATG
AAGAAGCAGGAGGAAGCTTATTATCAAGGAGACAATCTATTAAACCTTCAACTAGACGACTGGTATCCCCAGGTCAGACC
AATAGAATCGGGTGATTTTTTGCAGATTGAAACGGATCTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

71.384

100

0.714
  coiA Streptococcus pneumoniae D39

71.384

100

0.714
  coiA Streptococcus pneumoniae R6

71.384

100

0.714
  coiA Streptococcus mitis NCTC 12261

71.384

100

0.714
  coiA Streptococcus pneumoniae TIGR4

71.069

100

0.711
  coiA Lactococcus lactis subsp. cremoris KW2

42.154

100

0.431

Multiple sequence alignment