Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACH8EK_RS11410 Genome accession   NZ_OZ197910
Coordinates   2166043..2167230 (-) Length   395 a.a.
NCBI ID   WP_047922712.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-24-001     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2161043..2172230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EK_RS11380 - 2161107..2161301 (-) 195 WP_082280399.1 hypothetical protein -
  ACH8EK_RS11385 - 2161315..2162019 (-) 705 WP_050172120.1 opacity family porin -
  ACH8EK_RS11390 - 2162042..2162197 (-) 156 WP_395372682.1 hypothetical protein -
  ACH8EK_RS11395 - 2162295..2163091 (-) 797 Protein_2214 IS1595 family transposase -
  ACH8EK_RS11400 topA 2163178..2165484 (-) 2307 WP_003690118.1 type I DNA topoisomerase -
  ACH8EK_RS11405 - 2165556..2166017 (-) 462 WP_003690120.1 DUF494 domain-containing protein -
  ACH8EK_RS11410 dprA 2166043..2167230 (-) 1188 WP_047922712.1 DNA-processing protein DprA Machinery gene
  ACH8EK_RS11415 - 2167321..2168598 (-) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  ACH8EK_RS11420 - 2168591..2170711 (-) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  ACH8EK_RS11425 - 2170711..2171310 (-) 600 WP_003690128.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41882.99 Da        Isoelectric Point: 6.3096

>NTDB_id=1169738 ACH8EK_RS11410 WP_047922712.1 2166043..2167230(-) (dprA) [Neisseria gonorrhoeae isolate SGC-24-001]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPVHPDVLAGQLAMLAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=1169738 ACH8EK_RS11410 WP_047922712.1 2166043..2167230(-) (dprA) [Neisseria gonorrhoeae isolate SGC-24-001]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCTGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCGGTTCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCTTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

99.494

100

0.995

  dprA Neisseria gonorrhoeae MS11

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

90.176

100

0.906

  dprA Neisseria meningitidis MC58

90.176

100

0.906

  dprA Vibrio cholerae strain A1552

37.028

100

0.372


Multiple sequence alignment