Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACICP9_RS00045 Genome accession   NZ_OZ195516
Coordinates   7132..8628 (-) Length   498 a.a.
NCBI ID   WP_395497829.1    Uniprot ID   -
Organism   Rickettsiella endosymbiont of Litargus connexus isolate 54705     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2132..13628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICP9_RS00015 recF 2482..3558 (+) 1077 WP_395497819.1 DNA replication/repair protein RecF -
  ACICP9_RS00020 - 3595..3918 (+) 324 WP_395497821.1 DMT family transporter -
  ACICP9_RS00025 - 4169..4906 (-) 738 WP_395497823.1 rhodanese-related sulfurtransferase -
  ACICP9_RS00035 - 5081..6052 (-) 972 WP_395497825.1 biotin--[acetyl-CoA-carboxylase] ligase -
  ACICP9_RS00040 - 6134..7012 (-) 879 WP_395497827.1 Kdo hydroxylase family protein -
  ACICP9_RS00045 comM 7132..8628 (-) 1497 WP_395497829.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACICP9_RS00050 - 8683..8955 (-) 273 WP_071662935.1 ubiquinone biosynthesis accessory factor UbiK -
  ACICP9_RS00055 - 9019..10584 (-) 1566 WP_395497831.1 AAA family ATPase -
  ACICP9_RS00060 cfa 10699..11844 (+) 1146 WP_071662937.1 cyclopropane fatty acyl phospholipid synthase -
  ACICP9_RS00065 - 12054..12593 (+) 540 WP_071663042.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54846.60 Da        Isoelectric Point: 9.8202

>NTDB_id=1168737 ACICP9_RS00045 WP_395497829.1 7132..8628(-) (comM) [Rickettsiella endosymbiont of Litargus connexus isolate 54705]
MSLAIVQTRANAGIQALPVTVETHISNGLPSLSIVGLTETTVKGNRDRVRSAIINAQFEFPARRITINLAPADLPKQGGR
FDLPIALSILAASNQIPSNTLEQYEFIGELGLSGELRPVSGIIPFSLAAQKANHTIIVPLANAQEASFNKKTSILPAKNI
LQVCSHLHGRVPLSNYHADYSQLEHRQLPDLSEVFGQAHAKRALEICAAGKHSLLMIGPPGTGKTMLASRLISLLPLLSD
EAALELAAIHSISGQSLELSTWKFPPFRSPHHTASSIALVGGGNPPRPGEISLAHHGVLFLDELPEFDRQVLEALREPLE
SGNISISRASRQTEFPANFQLIAAMNPCPCGYLGSQVHPCVCVPPQIQRYRKKLSMPFLDRIDMCLEVNSLPKNYFRKPR
HEESSKTIRYRVKNAQVKQLKKFGTLNHNLNGNILKIACKLSNTDHKILENALEKFQLSTRACHRILRIARTIADLTECE
KIKTPHLMEALSYKVMKK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1168737 ACICP9_RS00045 WP_395497829.1 7132..8628(-) (comM) [Rickettsiella endosymbiont of Litargus connexus isolate 54705]
ATGTCACTAGCTATTGTGCAAACTCGTGCAAACGCCGGAATTCAAGCGCTTCCTGTTACTGTTGAAACTCATATATCAAA
TGGTTTACCTAGTTTATCTATTGTTGGACTCACTGAAACAACTGTCAAAGGGAATCGAGATCGGGTGCGTAGCGCTATAA
TTAATGCGCAATTTGAATTTCCTGCCCGACGAATAACTATCAATCTTGCCCCTGCCGATCTTCCAAAACAAGGAGGTCGA
TTTGATTTGCCAATTGCATTAAGTATTCTGGCAGCTTCTAACCAGATACCAAGCAATACGCTCGAACAGTATGAATTTAT
CGGTGAGCTAGGATTGTCAGGAGAACTTCGACCCGTTTCTGGTATTATCCCTTTTTCGTTAGCGGCACAAAAAGCCAACC
ACACTATTATAGTGCCCTTAGCCAATGCTCAAGAAGCCAGTTTCAATAAAAAAACGAGTATTTTACCTGCTAAAAATATT
TTACAAGTTTGCTCACATTTACATGGACGAGTTCCTTTATCAAATTACCATGCAGACTATTCTCAACTTGAGCATCGTCA
ATTACCCGATTTATCTGAAGTGTTCGGGCAAGCACATGCTAAACGAGCTTTAGAAATTTGCGCTGCAGGAAAACATAGCT
TATTAATGATAGGCCCGCCAGGCACTGGAAAAACGATGCTTGCCTCTCGTTTAATAAGTTTATTACCTTTACTCAGTGAT
GAAGCAGCTCTAGAACTTGCTGCGATACATTCAATCAGTGGACAATCTCTAGAACTAAGCACTTGGAAATTTCCTCCCTT
TCGTAGTCCTCATCACACCGCTTCAAGCATAGCGTTAGTAGGCGGCGGCAATCCACCCCGCCCAGGAGAAATATCATTGG
CCCATCATGGTGTTTTATTTTTGGATGAATTACCTGAATTTGACCGACAAGTATTGGAAGCCTTGCGTGAACCCTTAGAG
TCAGGAAATATAAGTATTTCACGTGCTTCCCGACAAACTGAATTTCCAGCTAATTTCCAGTTAATTGCTGCTATGAATCC
CTGCCCATGCGGTTATCTAGGTAGTCAGGTTCATCCTTGTGTGTGCGTACCGCCACAGATCCAACGTTATCGCAAAAAAT
TATCTATGCCTTTTTTGGATCGTATTGATATGTGCCTTGAAGTTAATTCTTTACCAAAAAATTATTTTCGGAAACCACGC
CATGAAGAAAGTAGCAAAACTATTCGATATAGAGTTAAAAATGCACAAGTTAAACAGCTAAAAAAATTTGGAACACTTAA
TCATAATTTAAACGGTAATATCTTAAAAATTGCCTGTAAATTATCAAATACCGATCACAAAATTTTAGAAAATGCTTTAG
AAAAATTTCAACTTTCAACACGTGCTTGTCATCGTATTTTACGGATAGCACGCACTATTGCAGATTTAACAGAATGTGAA
AAAATTAAAACTCCACACTTAATGGAAGCTTTAAGTTATAAAGTTATGAAAAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

100

0.544
  comM Legionella pneumophila str. Paris

54.637

99.598

0.544
  comM Legionella pneumophila strain ERS1305867

54.637

99.598

0.544
  comM Glaesserella parasuis strain SC1401

53.267

100

0.54
  comM Haemophilus influenzae Rd KW20

52.191

100

0.526
  comM Vibrio campbellii strain DS40M4

52

100

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.304

100

0.42

Multiple sequence alignment