Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACGWYI_RS15775 Genome accession   NZ_OZ193824
Coordinates   3326378..3327889 (+) Length   503 a.a.
NCBI ID   WP_392386251.1    Uniprot ID   -
Organism   MAG: Marinomonas primoryensis isolate FRAM_RAS_F4_10_1718-MAG_11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3321378..3332889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGWYI_RS15750 - 3321812..3323341 (-) 1530 WP_392386985.1 GNAT family N-acetyltransferase -
  ACGWYI_RS15755 - 3323553..3324818 (-) 1266 WP_392386248.1 ammonium transporter -
  ACGWYI_RS15760 glnK 3324906..3325244 (-) 339 WP_024023270.1 P-II family nitrogen regulator -
  ACGWYI_RS15765 - 3325750..3325983 (+) 234 WP_392386249.1 accessory factor UbiK family protein -
  ACGWYI_RS15770 - 3326050..3326337 (-) 288 WP_392386250.1 TIGR02450 family Trp-rich protein -
  ACGWYI_RS15775 comM 3326378..3327889 (+) 1512 WP_392386251.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACGWYI_RS15780 - 3328149..3329078 (+) 930 WP_392386986.1 bile acid:sodium symporter family protein -
  ACGWYI_RS15785 rep 3329224..3331272 (+) 2049 WP_392386252.1 DNA helicase Rep -
  ACGWYI_RS15790 - 3331291..3331626 (-) 336 WP_392386253.1 c-type cytochrome -
  ACGWYI_RS15795 - 3331770..3332063 (+) 294 WP_392386254.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54389.38 Da        Isoelectric Point: 7.8515

>NTDB_id=1168702 ACGWYI_RS15775 WP_392386251.1 3326378..3327889(+) (comM) [MAG: Marinomonas primoryensis isolate FRAM_RAS_F4_10_1718-MAG_11]
MSLATIYSRARVGVASPLVTVETHISNGLPSLNIVGLPEAAVREAKDRVRSAIINSHFEFPTRRVTINLAPADLPKEGGR
YDLAIAISVLVASGQLGEVNLQDIEFIGELALSGDIRGVPGLLPSAIACHQANRQLILPEDNQQEAALVESDAVFAKHLT
HVTAHLLKLSKLPACVSKPTAPLPLDHKDMRDVKGQYQARRALEVAAAGGHNLLFIGPAGTGKTMLASRLPSIMPAMTEA
EALAVASVQSVAGRKMGLDWHWSERPFRSPHHTCSAAALVGGGSIPKPGEASLAHCGVLFLDELPEFDRKVLEVLREPLE
SGEVHISRARGQMSFPARFQLVAAMNASNEAYNGGQDYYQSSASQKYLKKLSAPFLDRIDLHVEVPPLPSNVLVNAQEEG
ESSASIRLRVEKAVARQRARQGVQNALLSGRQLESICALSDDDKHFMQQALETLKLSARAYHRVLKVALTLADLNDSPVT
RAYLMESLSYRKMEKTLSMAASS

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1168702 ACGWYI_RS15775 WP_392386251.1 3326378..3327889(+) (comM) [MAG: Marinomonas primoryensis isolate FRAM_RAS_F4_10_1718-MAG_11]
ATGAGTTTAGCAACCATCTACAGTCGTGCCCGAGTGGGTGTGGCTTCCCCTTTAGTCACAGTCGAAACCCATATATCTAA
CGGTTTACCTTCTTTAAATATTGTCGGATTGCCAGAAGCGGCGGTTCGAGAAGCAAAAGATCGTGTGCGTAGTGCGATTA
TTAATAGCCATTTCGAATTTCCCACCAGAAGAGTCACCATTAACCTTGCCCCTGCGGACTTACCCAAAGAAGGCGGTCGT
TATGATTTAGCTATTGCGATCAGTGTGCTGGTGGCGTCAGGTCAATTAGGTGAAGTGAATCTTCAAGATATTGAATTTAT
TGGTGAGTTGGCGTTATCGGGTGATATTCGTGGCGTGCCAGGTTTATTGCCATCGGCGATTGCTTGTCATCAGGCTAATC
GACAACTGATCCTTCCAGAAGACAATCAACAAGAAGCGGCTTTGGTTGAAAGTGATGCGGTGTTTGCAAAACACCTTACT
CACGTCACCGCGCACCTTCTAAAGCTGAGTAAGCTGCCGGCCTGTGTTTCTAAACCGACGGCGCCGTTACCCTTGGACCA
CAAAGACATGCGTGATGTAAAAGGCCAATACCAAGCGCGACGAGCCTTGGAAGTCGCAGCGGCCGGTGGTCATAACCTCC
TTTTTATTGGTCCGGCTGGCACAGGCAAAACCATGTTGGCATCGCGTTTGCCCAGCATCATGCCAGCCATGACCGAAGCT
GAAGCGCTTGCCGTGGCGTCGGTTCAATCGGTCGCAGGGCGAAAGATGGGACTGGATTGGCATTGGTCAGAACGTCCATT
TCGATCTCCGCACCATACTTGTTCCGCGGCCGCTCTGGTCGGAGGCGGTTCCATTCCTAAGCCGGGTGAAGCCTCTTTGG
CGCATTGTGGTGTTTTGTTCCTTGATGAGCTGCCAGAATTTGATCGTAAAGTTTTAGAGGTTTTGCGAGAACCGCTAGAA
AGTGGTGAAGTGCATATTTCACGAGCGCGTGGGCAGATGTCCTTTCCAGCGCGCTTCCAACTAGTTGCCGCGATGAACGC
CAGCAACGAAGCTTATAACGGCGGACAAGATTATTACCAATCCAGTGCCAGTCAAAAGTACCTCAAAAAACTCTCGGCAC
CTTTTTTAGATCGTATCGACTTGCATGTGGAAGTGCCACCATTGCCTTCTAATGTTTTGGTGAACGCTCAAGAAGAGGGT
GAATCCAGCGCCAGTATTCGTTTGCGCGTTGAAAAAGCCGTAGCAAGACAGCGAGCACGCCAAGGTGTACAAAATGCCTT
GTTAAGCGGACGGCAGTTAGAATCTATTTGCGCCCTAAGCGACGACGATAAACACTTTATGCAGCAAGCGTTAGAAACCT
TAAAACTGTCGGCTCGCGCTTATCATCGGGTTTTAAAAGTCGCACTGACCTTAGCGGATTTAAATGATTCACCGGTAACC
AGAGCGTATTTAATGGAATCGTTAAGTTATCGAAAAATGGAAAAAACCTTGTCGATGGCGGCGTCTTCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.4

99.404

0.531
  comM Haemophilus influenzae Rd KW20

51.976

100

0.523
  comM Glaesserella parasuis strain SC1401

51.984

100

0.521
  comM Vibrio campbellii strain DS40M4

52.2

99.404

0.519
  comM Legionella pneumophila str. Paris

47.59

99.006

0.471
  comM Legionella pneumophila strain ERS1305867

47.59

99.006

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.996

100

0.439

Multiple sequence alignment