Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFEL6_RS18410 Genome accession   NZ_OZ183475
Coordinates   2572569..2574095 (-) Length   508 a.a.
NCBI ID   WP_375321449.1    Uniprot ID   -
Organism   Aliivibrio logei isolate 622f83115ee5131b54a8b4d1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2567569..2579095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFEL6_RS18380 - 2567581..2567748 (+) 168 WP_105056613.1 hypothetical protein -
  ACFEL6_RS18385 - 2567865..2568128 (+) 264 WP_375321446.1 YihD family protein -
  ACFEL6_RS18390 ccoG 2568388..2569806 (+) 1419 WP_375321447.1 cytochrome c oxidase accessory protein CcoG -
  ACFEL6_RS18395 - 2569864..2570847 (+) 984 WP_181044695.1 serine/threonine protein kinase -
  ACFEL6_RS18400 - 2570938..2571537 (+) 600 WP_181044702.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACFEL6_RS18405 - 2571612..2572469 (-) 858 WP_375321448.1 acyltransferase -
  ACFEL6_RS18410 comM 2572569..2574095 (-) 1527 WP_375321449.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFEL6_RS18415 ilvG 2574501..2576147 (+) 1647 WP_375321450.1 acetolactate synthase 2 catalytic subunit -
  ACFEL6_RS18420 ilvM 2576147..2576392 (+) 246 WP_060993484.1 acetolactate synthase 2 small subunit -
  ACFEL6_RS18425 ilvD 2576413..2578269 (+) 1857 WP_375321451.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55161.35 Da        Isoelectric Point: 6.9671

>NTDB_id=1168059 ACFEL6_RS18410 WP_375321449.1 2572569..2574095(-) (comM) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
MGLAIIHSRACVGVEAPEVTVEVHISNGMPGFSLVGLPETTVKEAKDRVRSAIINANFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIPETKLEGHEFVGELALSGELRKVKGVLPAALASLKSNRCLVVPDDNGDQAALVGKDIHKSAPHL
LSVCGFLCGQQQLGLLTSSPVDEPMQSLERDLQDIIGQQQGKRALEIAAAGGHNLLYLGPPGTGKTMLASRMSDLLPEMT
NDEALETAAVASLTHQNITESNWRARPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLREPL
ESGEIVISRAASKTRFPARFQLVGALNPSPTGYYEGNQTRTNPQLILRYLNRISGPLLDRFDMSLEIPLLPKGTLTEGGD
RGESTQKVKERVLVARARMLERSNKVNALLGSREVEKYCPLIKEDAAFLENTLHQLGLSIRAYHRIIKVSRTIADLAGEE
QIQRIHLAEAVGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1168059 ACFEL6_RS18410 WP_375321449.1 2572569..2574095(-) (comM) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
ATGGGATTAGCAATAATACACAGCCGAGCGTGCGTAGGGGTTGAGGCACCAGAAGTAACCGTTGAGGTTCATATCAGCAA
TGGAATGCCTGGATTTAGTCTTGTTGGGTTGCCAGAAACCACAGTTAAAGAAGCAAAAGACAGGGTAAGAAGTGCGATCA
TTAATGCGAACTTTGAATTCCCATCAAAACGAATTACAGTAAATTTAGCACCTGCAGATTTACCTAAAGAAGGAGGTCGA
TTTGATCTCCCTATTGCGCTTGGTATTCTTGCTGCTTCAGATCAGATCCCAGAGACAAAATTGGAGGGGCATGAATTTGT
TGGTGAGTTAGCATTATCGGGAGAGCTTAGAAAGGTAAAGGGTGTTTTACCTGCAGCACTTGCTTCATTAAAGTCAAATC
GTTGCTTGGTTGTTCCTGATGATAATGGTGATCAGGCTGCATTGGTGGGTAAAGATATTCATAAATCAGCGCCTCATTTA
TTGTCTGTATGTGGTTTTTTATGTGGTCAACAACAGCTTGGGTTATTAACGTCCTCTCCTGTTGATGAGCCGATGCAATC
GCTTGAGCGTGATCTGCAAGATATTATCGGACAGCAACAAGGCAAAAGAGCATTAGAGATAGCTGCAGCAGGTGGGCATA
ATCTTTTATACCTTGGCCCTCCGGGGACAGGGAAAACAATGTTGGCCTCTCGTATGAGTGATTTACTTCCGGAGATGACT
AATGATGAAGCGCTAGAAACCGCGGCTGTGGCTTCATTAACTCATCAAAATATTACGGAATCTAATTGGCGTGCTCGTCC
GTTTCGTTCTCCACATCATTCTAGCTCTATGGCCGCTTTGGTTGGTGGCGGATCAATTCCTAGACCGGGAGAAATTTCAC
TAGCTCATAATGGTATTTTATTTTTGGACGAAATGCCTGAGTTTGAAAGAAAGGTACTTGATTCACTGCGTGAGCCATTA
GAGTCTGGAGAGATTGTCATTTCCCGTGCAGCAAGTAAGACTCGATTCCCTGCTCGTTTTCAATTGGTTGGGGCATTAAA
TCCTAGTCCTACAGGGTATTATGAAGGGAATCAAACTCGTACTAATCCTCAATTAATACTCCGTTACCTTAATCGAATTT
CAGGCCCTTTGCTTGACCGTTTTGATATGTCATTAGAGATACCTCTATTACCTAAAGGAACACTAACAGAAGGAGGAGAT
AGAGGAGAGTCGACACAAAAAGTAAAGGAGAGAGTCCTTGTTGCTCGCGCCCGAATGCTTGAACGCAGTAATAAGGTGAA
TGCTTTATTAGGCAGCAGAGAGGTCGAGAAATATTGCCCATTAATAAAGGAAGATGCGGCATTTTTAGAAAATACACTTC
ATCAACTTGGTCTTTCTATTCGTGCTTATCATCGAATAATTAAAGTGTCGAGAACCATTGCAGATCTAGCAGGAGAAGAA
CAAATTCAACGGATTCACCTTGCTGAAGCTGTTGGATATAGAGCAATGGACCGTTTGTTAAAGCAACTTACTGCTCAGGC
TGTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

79.921

100

0.799
  comM Vibrio campbellii strain DS40M4

79.921

100

0.799
  comM Haemophilus influenzae Rd KW20

64.103

99.803

0.64
  comM Glaesserella parasuis strain SC1401

63.333

100

0.636
  comM Legionella pneumophila str. Paris

50.101

97.835

0.49
  comM Legionella pneumophila strain ERS1305867

50.101

97.835

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

99.606

0.439

Multiple sequence alignment