Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFCTL_RS03490 Genome accession   NZ_OZ182546
Coordinates   718006..719517 (-) Length   503 a.a.
NCBI ID   WP_027220458.1    Uniprot ID   -
Organism   Legionella pneumophila isolate ZIB8567     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 713006..724517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCTL_RS03460 - 713565..714236 (-) 672 WP_010946321.1 TIGR00153 family protein -
  ACFCTL_RS03465 - 714414..715178 (+) 765 WP_010946322.1 hypothetical protein -
  ACFCTL_RS03470 - 715482..716045 (+) 564 WP_010946323.1 YqgE/AlgH family protein -
  ACFCTL_RS03475 ruvX 716038..716457 (+) 420 WP_011213195.1 Holliday junction resolvase RuvX -
  ACFCTL_RS03480 - 716507..717400 (+) 894 WP_027220456.1 aspartate carbamoyltransferase catalytic subunit -
  ACFCTL_RS03485 - 717514..717900 (-) 387 WP_027220457.1 hypothetical protein -
  ACFCTL_RS03490 comM 718006..719517 (-) 1512 WP_027220458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFCTL_RS03495 - 719733..719987 (-) 255 WP_011214812.1 ubiquinone biosynthesis accessory factor UbiK -
  ACFCTL_RS03500 - 720132..720470 (+) 339 WP_011213200.1 P-II family nitrogen regulator -
  ACFCTL_RS03505 - 720480..721061 (-) 582 WP_014841086.1 5-formyltetrahydrofolate cyclo-ligase -
  ACFCTL_RS03510 - 721308..721493 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  ACFCTL_RS03515 - 721507..722322 (+) 816 WP_027220459.1 aminotransferase class IV -
  ACFCTL_RS03520 - 722349..723032 (-) 684 WP_050566908.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54957.56 Da        Isoelectric Point: 7.9538

>NTDB_id=1167969 ACFCTL_RS03490 WP_027220458.1 718006..719517(-) (comM) [Legionella pneumophila isolate ZIB8567]
MSLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLLNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
THLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGSEEQLFLREVMSKLKLSARGYHRLLKVSRTIADMNE
CNKVMLNHLQQALSYKQILHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1167969 ACFCTL_RS03490 WP_027220458.1 718006..719517(-) (comM) [Legionella pneumophila isolate ZIB8567]
ATGAGTCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTGTCGCACAACCAGTATCTGTGGAAGTCCATTTATCAAA
TGGATTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACAGCAGTGAAAGAAAGTAAAGACCGCGTGCGCAGCGCCATTA
TAAATAGCCAATTCGAATTTCCATGCCGTAAAATTACCGTTAATCTTGGCCCTGCCAATTTACCTAAAACGGGAAGTGGC
TTTGACTTGCCTATTGCACTAGGGATACTCGCAGCATCGGAACAAATTCCTCTCACCAACCTTGCAAACCACGAATTTAT
TGGAGAATTGGCTTTAAGCGGCGAGCTTAGAGGGGTTTCTGCCATTATACCTGCTGTTCTTGCCGCTCATAAAGACAATC
AACATCTGATTATCGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGCCATCCAAAAGTCTTTACTGCCAATAACTTA
CGCGAAGTTTGTGATTATCTATGCCAGGGTACTTCTTTACAGAACTTACCTCCCAAACCAGATCTTTTATTAAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGCA
TTCTGCTAAGTGGCGCGCCGGGCAGTGGAAAAACGATGATGGCAAAAAGATTTAGTACCTTGCTACCCGAGCTATCCGAA
ACACAAGCTCTCGAATGCGCAGCCATTAATTCAATTCGAGGTAAATTACCTGATTTCAGGGAGTGGCGTTTGCCTCCTTT
TCGTGCACCACATCATACTGCCTCACCTGTCGCGTTAGTCGGAGGAGGCAACCCGCCGAAACCTGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTATTAGAGACACTTAGAGAACCTTTGGAG
TCAGGGCATATTTGCATTTCCAGAGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATTGCAGCAATGAATCC
TTGCCCTTGTGGCCAATGGGGTAATTCACAAGCCAATTGCTTATGTACTCCTGATAGAATCAGCCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACAATTCACGCATTATCTCAAGAGGAGTTAATTAAACCCAAT
ACCCATTTAGAAAAACAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
TCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGATCAGAAGAACAATTGTTTCTCCGAGAAG
TGATGAGTAAACTGAAACTGTCTGCTCGTGGTTACCATCGCTTACTAAAAGTAAGCAGGACAATTGCTGATATGAATGAA
TGTAATAAGGTCATGCTAAACCATCTGCAACAGGCGTTATCCTATAAACAAATCTTGCATTTGCCTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

97.813

100

0.978
  comM Legionella pneumophila strain ERS1305867

97.813

100

0.978
  comM Haemophilus influenzae Rd KW20

50.197

100

0.507
  comM Vibrio cholerae strain A1552

50.298

100

0.503
  comM Vibrio campbellii strain DS40M4

49.703

100

0.499
  comM Glaesserella parasuis strain SC1401

47.732

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.169

99.006

0.417

Multiple sequence alignment