Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLIIK_RS10345 Genome accession   NZ_OZ176236
Coordinates   2210283..2211809 (+) Length   508 a.a.
NCBI ID   WP_410367089.1    Uniprot ID   -
Organism   Achromobacter mucicolens isolate LjRoot1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2205283..2216809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIIK_RS10320 - 2205378..2205647 (+) 270 WP_006387993.1 HPr family phosphocarrier protein -
  ACLIIK_RS10325 ptsP 2205811..2207469 (+) 1659 WP_233462034.1 phosphoenolpyruvate--protein phosphotransferase -
  ACLIIK_RS10330 amt 2207611..2208849 (-) 1239 WP_056315887.1 ammonium transporter -
  ACLIIK_RS10335 - 2208878..2209216 (-) 339 WP_006218735.1 P-II family nitrogen regulator -
  ACLIIK_RS10340 - 2209890..2210165 (+) 276 WP_226848708.1 accessory factor UbiK family protein -
  ACLIIK_RS10345 comM 2210283..2211809 (+) 1527 WP_410367089.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLIIK_RS10350 rpmI 2212135..2212332 (+) 198 WP_008159912.1 50S ribosomal protein L35 -
  ACLIIK_RS10355 rplT 2212350..2212709 (+) 360 WP_006218741.1 50S ribosomal protein L20 -
  ACLIIK_RS10360 pheS 2212787..2213809 (+) 1023 WP_056315894.1 phenylalanine--tRNA ligase subunit alpha -
  ACLIIK_RS10365 pheT 2213823..2216240 (+) 2418 WP_142049587.1 phenylalanine--tRNA ligase subunit beta -
  ACLIIK_RS10370 - 2216243..2216581 (+) 339 WP_081101104.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 52616.90 Da        Isoelectric Point: 8.3692

>NTDB_id=1167933 ACLIIK_RS10345 WP_410367089.1 2210283..2211809(+) (comM) [Achromobacter mucicolens isolate LjRoot1]
MTLAVLASRALCGMHAHAVRVETHLGPGLPGFNVVGLVDTEVRESRERVRAAIINSGFEFPAGRITVNLSPADMPKESGR
FDLPIALGVLLASGQLAAPAQDGAPAGAPDPALAGLVLAGELSLTGALVPVAAPLVIALSVARDAPDATLILPAGSAEQA
AWVPGLRVLSARCLADVAAHAAGVCLLPNAVPAPWPPAAPVPCLSDVRGQAGARRALEVAAAGGHSLLMLGPPGAGKSML
AARLPGLLPPLERNQALEAAAVATMAGMPDTLTGQPPFRAPHHSASVAALVGGGGRPRPGEISLAHHGVLFLDELPEFSR
RSLEALREPLEAGRVVISRALHAAQFPARFQLVAAMNPCPCGWRGHPARTCACTPDQVTRYAGKISGPLLDRIDLHVALP
PSDPAWMTAPPGESSQAVRERVVRCRERQMARQGKINAGLAGAELDEFCVMDADAQTLLQQAMRRLTGSARAMHRALRVA
RTIADLDGQAVLAASHVAQAVQYRRTGV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1167933 ACLIIK_RS10345 WP_410367089.1 2210283..2211809(+) (comM) [Achromobacter mucicolens isolate LjRoot1]
GTGACGCTTGCCGTACTTGCCAGCCGGGCCCTTTGCGGCATGCATGCCCATGCGGTCCGCGTGGAAACGCACCTGGGACC
CGGGCTGCCGGGTTTCAACGTCGTCGGGCTGGTCGACACCGAAGTCCGGGAAAGCCGCGAGCGGGTCCGCGCGGCCATCA
TCAACAGCGGTTTCGAATTTCCGGCGGGGCGCATCACCGTCAACCTGTCGCCGGCCGACATGCCCAAGGAGTCCGGCCGC
TTCGATCTGCCGATTGCGTTGGGGGTGCTGCTGGCGTCCGGGCAGTTGGCTGCCCCCGCGCAAGACGGCGCGCCGGCCGG
CGCACCGGATCCCGCGCTAGCCGGGCTGGTGCTTGCAGGCGAACTTTCCCTCACGGGGGCGCTCGTGCCCGTCGCCGCGC
CGCTGGTGATCGCCCTGAGCGTCGCTCGGGACGCGCCTGACGCCACACTTATCTTGCCAGCCGGCAGCGCCGAGCAGGCC
GCCTGGGTTCCCGGCTTGCGCGTGCTGTCGGCCCGCTGCCTGGCGGATGTGGCCGCCCACGCGGCGGGCGTCTGCCTGCT
TCCCAATGCCGTGCCCGCGCCGTGGCCGCCCGCCGCGCCCGTCCCCTGTCTGTCGGATGTGCGAGGCCAGGCCGGCGCGC
GGCGGGCGCTTGAAGTCGCGGCGGCGGGCGGCCACAGCCTGTTGATGCTGGGGCCGCCTGGTGCGGGCAAGAGCATGCTG
GCCGCACGCCTGCCGGGCCTGCTGCCGCCGCTGGAGCGCAATCAGGCGCTCGAGGCGGCGGCCGTGGCGACGATGGCCGG
AATGCCCGACACGCTCACCGGGCAGCCGCCGTTCAGGGCGCCGCACCACTCGGCGTCGGTAGCTGCGCTGGTCGGCGGCG
GCGGGCGCCCGCGGCCCGGTGAAATCAGTCTGGCGCATCACGGCGTGCTGTTCCTGGATGAGCTTCCGGAATTCAGCCGC
CGCTCGCTCGAGGCGCTGCGAGAGCCGCTGGAGGCGGGCAGGGTGGTCATCTCGCGGGCGTTGCACGCCGCGCAGTTTCC
GGCCCGTTTTCAGCTCGTGGCCGCCATGAATCCCTGTCCTTGCGGCTGGCGCGGCCATCCGGCGCGCACGTGCGCCTGCA
CGCCGGATCAGGTGACGCGTTATGCGGGCAAAATATCGGGTCCGCTACTGGACCGGATCGATCTGCATGTGGCCCTGCCG
CCGTCCGATCCCGCCTGGATGACCGCGCCGCCCGGCGAATCGTCGCAAGCCGTCCGCGAGCGCGTGGTCCGCTGCCGTGA
GCGCCAGATGGCCCGCCAGGGCAAGATCAACGCCGGGCTGGCCGGGGCCGAGCTGGACGAATTCTGCGTGATGGATGCCG
ATGCCCAGACGCTGCTGCAGCAGGCCATGCGCCGCCTGACAGGCTCGGCGCGGGCGATGCACCGGGCGCTGCGCGTGGCC
CGCACGATCGCGGATCTGGACGGCCAGGCAGTGCTGGCGGCCAGTCATGTCGCGCAGGCGGTGCAGTACCGGCGTACGGG
GGTATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-154)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.924

100

0.492
  comM Vibrio campbellii strain DS40M4

47.451

100

0.476
  comM Haemophilus influenzae Rd KW20

46.887

100

0.474
  comM Legionella pneumophila str. Paris

44.847

100

0.463
  comM Legionella pneumophila strain ERS1305867

44.847

100

0.463
  comM Glaesserella parasuis strain SC1401

45.349

100

0.461
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.506

100

0.423

Multiple sequence alignment