Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   AB8523_RS10330 Genome accession   NZ_OZ156464
Coordinates   1983093..1983788 (-) Length   231 a.a.
NCBI ID   WP_369151537.1    Uniprot ID   -
Organism   Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1978093..1988788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8523_RS10305 - 1979111..1980295 (-) 1185 WP_369151530.1 IS3 family transposase -
  AB8523_RS10310 - 1980394..1981254 (+) 861 WP_369153121.1 IS3 family transposase -
  AB8523_RS10315 - 1981639..1981827 (+) 189 WP_369151533.1 hypothetical protein -
  AB8523_RS10320 - 1981807..1981956 (-) 150 WP_369151228.1 hypothetical protein -
  AB8523_RS10325 - 1981961..1983034 (+) 1074 WP_369151535.1 IS256 family transposase -
  AB8523_RS10330 ideA 1983093..1983788 (-) 696 WP_369151537.1 endonuclease Regulator
  AB8523_RS10335 - 1984138..1985322 (+) 1185 WP_369151530.1 IS3 family transposase -
  AB8523_RS10340 - 1985382..1986293 (+) 912 WP_369151540.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  AB8523_RS10345 - 1986290..1987342 (+) 1053 WP_369151542.1 DNA adenine methylase -
  AB8523_RS10350 - 1987350..1988756 (+) 1407 WP_369151543.1 hypothetical protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 27555.44 Da        Isoelectric Point: 8.8086

>NTDB_id=1167900 AB8523_RS10330 WP_369151537.1 1983093..1983788(-) (ideA) [Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6]
MKKYLIFSTLFFSLSFSVFSESPSSFSKAKRLLYKEIYKDHNETFYCGCSYTGKVVDLESCNYEVRRNTKRAKRIEAEHI
VPAYWIAHLTEKGRECWSKGTKLKGINARKYCEKNNPEFKQAHNDLMNLVPAIGEVNGDRSNYKFSMIESEERKYGACDF
EIYKNKKTKIRVAEPPKNSRGDIARIYFYMQDKYGLEFTDETFYLMKYWNEIDPIDEWEKERIRRILEIQE

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1167900 AB8523_RS10330 WP_369151537.1 1983093..1983788(-) (ideA) [Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6]
ATGAAAAAATATCTAATATTTTCTACCTTATTTTTCAGTCTTTCTTTTTCTGTTTTTTCAGAAAGCCCATCATCATTTTC
AAAAGCCAAAAGACTTCTATACAAAGAAATATACAAAGACCACAACGAAACTTTTTATTGTGGCTGTTCATACACTGGAA
AAGTAGTTGATTTAGAAAGTTGTAATTATGAAGTTAGGAGAAATACCAAGAGAGCAAAAAGAATAGAAGCAGAACATATT
GTTCCTGCTTATTGGATAGCCCACCTAACTGAAAAAGGTAGGGAGTGTTGGAGTAAAGGAACAAAATTAAAAGGCATTAA
TGCTAGAAAATATTGTGAGAAAAATAATCCTGAATTTAAACAGGCTCATAATGATTTAATGAATTTAGTTCCTGCTATTG
GGGAAGTAAATGGTGATAGGTCAAACTATAAATTTTCTATGATTGAAAGTGAAGAAAGAAAATATGGGGCTTGTGATTTT
GAGATTTATAAAAACAAAAAAACTAAAATTAGAGTTGCAGAACCACCTAAAAATTCTCGTGGTGATATAGCAAGAATATA
TTTTTATATGCAAGATAAATACGGTTTAGAATTTACTGATGAAACTTTCTATCTTATGAAATATTGGAATGAAATTGACC
CAATTGATGAATGGGAAAAAGAGCGGATTAGAAGAATATTGGAAATACAAGAATGA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(27-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

48.276

100

0.485
  dns Vibrio parahaemolyticus RIMD 2210633

45.923

100

0.463
  dns Aliivibrio fischeri ES114

45.259

100

0.455
  dns Vibrio cholerae strain A1552

43.83

100

0.446
  dns Campylobacter jejuni RM1221

35.887

100

0.385

Multiple sequence alignment