Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB8523_RS05080 Genome accession   NZ_OZ156464
Coordinates   1039062..1039301 (+) Length   79 a.a.
NCBI ID   WP_369149927.1    Uniprot ID   -
Organism   Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1034062..1044301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8523_RS05045 - 1034475..1035512 (-) 1038 WP_369149919.1 DNA cytosine methyltransferase -
  AB8523_RS05050 - 1035516..1036298 (-) 783 WP_369149920.1 hypothetical protein -
  AB8523_RS05055 - 1036367..1037551 (-) 1185 WP_369149922.1 IS3 family transposase -
  AB8523_RS05060 - 1037927..1038088 (-) 162 WP_369149923.1 hypothetical protein -
  AB8523_RS05065 - 1038263..1038367 (+) 105 Protein_994 transposase -
  AB8523_RS05070 - 1038511..1038876 (+) 366 WP_369149925.1 transposase -
  AB8523_RS05075 - 1038876..1039010 (+) 135 WP_369149926.1 hypothetical protein -
  AB8523_RS05080 comM 1039062..1039301 (+) 240 WP_369149927.1 hypothetical protein Machinery gene
  AB8523_RS05085 - 1039313..1039942 (-) 630 WP_369149928.1 C39 family peptidase -
  AB8523_RS05090 - 1039939..1040481 (-) 543 WP_369149929.1 hypothetical protein -
  AB8523_RS05095 - 1041009..1041251 (-) 243 WP_369149931.1 hypothetical protein -
  AB8523_RS05100 - 1041505..1042167 (+) 663 WP_369149933.1 transposase -
  AB8523_RS05105 - 1042249..1042725 (+) 477 WP_369149934.1 hypothetical protein -
  AB8523_RS05110 - 1042909..1043571 (+) 663 WP_369149935.1 transposase -
  AB8523_RS05115 - 1043568..1044053 (+) 486 WP_369149936.1 transposase -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 9225.41 Da        Isoelectric Point: 5.6142

>NTDB_id=1167894 AB8523_RS05080 WP_369149927.1 1039062..1039301(+) (comM) [Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6]
MERQGKVNDRLNSDEIDRLIVLSEDNKQLLEDVIDKLHLSARAYHRILKVARTIADLDQAQNIEQQHLIEAIGYRRFDG

Nucleotide


Download         Length: 240 bp        

>NTDB_id=1167894 AB8523_RS05080 WP_369149927.1 1039062..1039301(+) (comM) [Candidatus Thiodubiliella endoseptemdiera isolate 1890dec5-4e9f-4058-b81e-4ca9a2b3c0b6]
TTGGAAAGACAAGGTAAGGTAAATGATCGCTTAAATTCAGATGAGATCGATCGTTTAATTGTATTGAGTGAAGATAATAA
GCAATTATTAGAAGATGTGATTGATAAATTACATCTTTCAGCCAGAGCTTATCATCGAATTTTAAAAGTGGCTAGAACCA
TTGCTGATTTAGATCAGGCTCAAAATATTGAGCAGCAACATTTGATTGAGGCAATTGGTTATCGGCGGTTTGATGGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(2-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.667

94.937

0.557
  comM Vibrio campbellii strain DS40M4

51.282

98.734

0.506
  comM Glaesserella parasuis strain SC1401

50

98.734

0.494
  comM Vibrio cholerae strain A1552

50

98.734

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.887

89.873

0.43
  comM Legionella pneumophila str. Paris

40.789

96.203

0.392
  comM Legionella pneumophila strain ERS1305867

40.789

96.203

0.392

Multiple sequence alignment