Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3232_RS00670 Genome accession   NZ_OZ061319
Coordinates   139874..141400 (-) Length   508 a.a.
NCBI ID   WP_043490171.1    Uniprot ID   A0A377PD10
Organism   Hafnia alvei isolate Hafnia alvei CIRM-BIA2828     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 134874..146400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3232_RS00660 hdfR 138553..139386 (-) 834 WP_316455200.1 HTH-type transcriptional regulator HdfR -
  AB3232_RS00665 - 139509..139847 (+) 339 WP_025802063.1 DUF413 domain-containing protein -
  AB3232_RS00670 comM 139874..141400 (-) 1527 WP_043490171.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3232_RS00675 - 141740..142969 (+) 1230 WP_046450419.1 MFS transporter -
  AB3232_RS00680 ilvL 143103..143201 (+) 99 WP_071778685.1 ilv operon leader peptide -
  AB3232_RS00685 ilvG 143342..144988 (+) 1647 WP_316455199.1 acetolactate synthase 2 catalytic subunit -
  AB3232_RS00690 ilvM 144985..145260 (+) 276 WP_080723891.1 acetolactate synthase 2 small subunit -
  AB3232_RS00695 - 145333..146265 (+) 933 WP_025802071.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54884.22 Da        Isoelectric Point: 7.8238

>NTDB_id=1165829 AB3232_RS00670 WP_043490171.1 139874..141400(-) (comM) [Hafnia alvei isolate Hafnia alvei CIRM-BIA2828]
MSVAMINTRAAIGVQAPAVSVEAHISTGLPGFTLVGLPEATVKEAKDRVRSAIINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILIASEQLSATSVEGLELLGELGLSGALRRIQGAIPAAMAAQHHQRKLIAPEENEEELGLLGEQQPHLIANH
LLQVCDYLSGESPLLPPKVSQLSSQSPNTKDMRDIIGQEQARRALEIAATGGHNLLLLGPPGTGKTMLASRLNSILPPLT
TEEALESAAVASLVHQSTTGQSCYQRPFRTPHHSASMAALIGGGSLPRPGEISLAHNGVLFLDELPEFERRVLDALREPL
ESGEACISRALAKVTFPARVQLVAAMNPSPTGHYKGIHARTPPQQILKYLSRLSGPFLDRFDLSIEVPLLPAGVLSIQKR
VGESSEVIRQRVCLAREKQYQRSGKLNAHLAGKEMDRVCSLSQEDAAFLEQALEKMGLSVRAWHRILKVARSIADLAQSD
NISRIHIAEALSYRSMDRLIQHLHQALQ

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1165829 AB3232_RS00670 WP_043490171.1 139874..141400(-) (comM) [Hafnia alvei isolate Hafnia alvei CIRM-BIA2828]
ATGTCAGTGGCGATGATTAATACCCGTGCAGCAATCGGCGTGCAGGCACCCGCCGTGAGCGTTGAAGCACACATCAGTAC
CGGGCTTCCCGGTTTTACATTAGTAGGTTTGCCTGAGGCGACCGTGAAAGAGGCTAAAGACCGCGTAAGAAGCGCCATCA
TAAATTGCGGTTTTACTTTCCCGGCAAAACGTATCACGGTGAATTTAGCTCCCGCAGATCTTCCCAAAGAGGGCGGTCGC
TACGATCTTCCCATTGCAATCGCCATTTTGATTGCTTCTGAGCAACTTAGCGCGACTTCGGTGGAAGGATTAGAGTTACT
CGGTGAATTGGGCCTTTCAGGCGCACTACGGCGCATTCAGGGCGCTATACCAGCAGCTATGGCCGCACAGCATCATCAGC
GTAAATTAATCGCACCAGAGGAAAATGAGGAAGAGCTTGGCCTGCTTGGAGAACAACAGCCCCATCTCATTGCCAATCAT
CTTCTTCAGGTTTGTGATTATCTCAGCGGTGAATCACCGCTTCTACCACCGAAGGTCTCTCAGCTATCCTCCCAATCTCC
CAACACAAAGGATATGCGGGATATTATTGGGCAAGAACAGGCACGAAGAGCTTTAGAAATCGCCGCCACAGGCGGCCACA
ACTTATTGTTATTGGGGCCACCCGGCACAGGGAAAACTATGTTAGCCAGCCGCCTTAATAGCATATTGCCACCGTTAACC
ACCGAAGAGGCTTTAGAGAGTGCGGCTGTCGCTAGTTTGGTACATCAATCAACCACGGGGCAATCTTGTTACCAGCGGCC
ATTTAGAACCCCACATCACAGTGCTTCAATGGCAGCACTCATTGGAGGTGGGTCTTTGCCAAGACCCGGAGAGATTTCTC
TGGCACATAACGGGGTATTATTTTTGGATGAACTGCCCGAGTTTGAACGGCGAGTGTTGGATGCTCTGCGCGAACCGCTT
GAGTCTGGCGAAGCATGCATTTCTAGGGCACTGGCAAAAGTCACTTTCCCTGCAAGAGTACAATTAGTTGCTGCTATGAA
TCCAAGTCCGACAGGACATTACAAAGGCATTCATGCTCGTACACCACCACAGCAGATACTCAAATATCTATCCCGCTTAT
CAGGCCCATTTTTAGATCGTTTTGACCTCTCTATTGAAGTGCCATTGTTACCCGCAGGCGTTCTTAGCATTCAAAAACGC
GTTGGAGAAAGCAGCGAGGTTATTCGCCAACGAGTCTGTTTAGCACGAGAAAAACAGTATCAACGATCGGGAAAGCTCAA
CGCACACTTGGCAGGCAAAGAGATGGACAGAGTATGCTCACTATCTCAAGAAGATGCGGCATTTCTGGAACAAGCGCTAG
AGAAGATGGGATTATCGGTTAGGGCTTGGCATCGAATACTAAAAGTTGCTCGTTCTATTGCAGATCTTGCACAAAGTGAC
AACATCAGCCGAATTCATATTGCAGAGGCACTCAGCTATCGCTCAATGGATCGTTTAATCCAACATCTCCATCAGGCACT
GCAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377PD10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.1

100

0.612
  comM Glaesserella parasuis strain SC1401

60.98

100

0.612
  comM Vibrio cholerae strain A1552

60.835

99.016

0.602
  comM Vibrio campbellii strain DS40M4

60.277

99.606

0.6
  comM Legionella pneumophila str. Paris

48.134

100

0.482
  comM Legionella pneumophila strain ERS1305867

48.134

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.68

97.835

0.457

Multiple sequence alignment