Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3226_RS13695 Genome accession   NZ_OZ061318
Coordinates   3004810..3006303 (+) Length   497 a.a.
NCBI ID   WP_367373429.1    Uniprot ID   -
Organism   Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2999810..3011303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3226_RS13660 - 3000241..3001578 (-) 1338 WP_367373427.1 ammonium transporter -
  AB3226_RS13665 glnK 3001614..3001952 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  AB3226_RS13670 - 3002369..3002629 (+) 261 WP_283189406.1 accessory factor UbiK family protein -
  AB3226_RS13675 - 3003048..3003569 (+) 522 WP_367373428.1 Bro-N domain-containing protein -
  AB3226_RS13680 - 3003623..3003928 (-) 306 WP_283184651.1 HigA family addiction module antitoxin -
  AB3226_RS13685 - 3003937..3004215 (-) 279 WP_123720244.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AB3226_RS13690 - 3004460..3004630 (+) 171 WP_201061277.1 hypothetical protein -
  AB3226_RS13695 comM 3004810..3006303 (+) 1494 WP_367373429.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB3226_RS13700 glyA 3006403..3007668 (-) 1266 WP_367373430.1 serine hydroxymethyltransferase -
  AB3226_RS13705 - 3007703..3008875 (-) 1173 WP_367373431.1 aspartate aminotransferase family protein -
  AB3226_RS13710 - 3008932..3009750 (-) 819 WP_367373432.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB3226_RS13715 - 3009750..3011000 (-) 1251 WP_367373433.1 benzoate/H(+) symporter BenE family transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52704.66 Da        Isoelectric Point: 8.2046

>NTDB_id=1165814 AB3226_RS13695 WP_367373429.1 3004810..3006303(+) (comM) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
MSLSIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPIAPYASNGLLYANKPYPDLNEVQGQLAAKRALLIAAAGGHNLLFSGPPGTGKTLLASRLPGLLPPLSE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVARESTALNPIKTG
DDTASASALVAQARERQQQRQGCANAFLDLPGLRQHCALSKADEGWLESACERLTLSLRAAHRLLKVARTLADLEQVDAI
GRSHVAEALQYRPSAPS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1165814 AB3226_RS13695 WP_367373429.1 3004810..3006303(+) (comM) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGGTCGGCGTGGAAGCGCCCGCCGTCACCGTAGAAGTCCATCTGGCCAA
CGGCTTGCCATCGCTGACCATGGTTGGGCTACCTGAAGCGGCCGTGAAGGAAAGCAAGGACCGGGTACGCAGCGCGATCA
TCAATTCAGGTCTGCAATTTCCGGCGCGGCGTATCACCTTGAATCTCGCCCCGGCCGATTTACCGAAGGACGGCGGACGG
TTCGATCTGGCGATTGCCCTGGGGATTCTGTCGGCCAGCGTGCAGGTCCCAACATTGACGCTGGATGATGTGGAGTGTCT
TGGGGAGTTGGCACTGTCGGGCGCGGTGCGGGCAGTTCGGGGTGTGTTGCCCGCTGCGCTGGCAGCGCGCAAGGCCGGAC
GCACACTGGTGGTGCCGCGAGCGAATGCCGAGGAGGCCTGCCTGGCTTCAGGGCTGAAAGTGATTGCGGTGGATCATTTG
CTGGAAGCCGTCGCACATTTCAATGGCCACACGCCTATCGCGCCCTATGCTTCCAATGGTTTGCTCTACGCCAACAAACC
CTACCCCGATTTGAATGAAGTGCAGGGGCAACTCGCGGCCAAGCGCGCGTTGCTGATTGCGGCCGCGGGAGGTCATAACC
TGCTGTTTAGTGGTCCACCCGGCACGGGAAAAACGTTGTTGGCGAGTCGTCTGCCGGGGCTGTTACCACCATTGTCCGAG
AGCGAAGCACTGGAAGTCGCAGCGATTCAATCCGTCGCCAGTTGTGTGCCACTGAGCCATTGGCCACAGCGCCCCTTCCG
ACAGCCACACCATTCCGCTTCAGGCCCGGCACTGGTGGGCGGCGGCTCTAAACCGCAACCCGGCGAAATCACCCTCGCCC
ACCATGGTGTGCTGTTCCTCGATGAACTCCCGGAATTCGACCGCAAGGTGCTGGAGGTATTGAGAGAGCCACTGGAATCC
GGCCACATCGTGATTTCCCGCGCCAAGGACCGCGTACGCTTCCCGGCGCGCTTTCAACTGGTCGCCGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAGCCGAGTGGCCGCTGTTCCTGTACGCCGGACATGGTTCAGCGCTATCGCAACAAACTGT
CGGGGCCGCTGCTGGACCGCATCGATCTGCATCTAACCGTAGCCCGGGAAAGCACGGCGTTGAACCCGATCAAAACCGGT
GACGACACGGCCAGCGCTTCTGCCCTGGTCGCCCAGGCCCGGGAGCGCCAGCAACAGCGTCAAGGCTGCGCCAACGCCTT
TCTCGACCTGCCAGGGCTACGCCAGCATTGCGCGTTATCCAAAGCCGATGAAGGCTGGCTGGAAAGCGCCTGCGAGCGAC
TGACCCTTTCGCTTCGTGCCGCTCACCGCCTACTGAAAGTCGCCCGTACCCTGGCGGATCTGGAACAAGTAGACGCTATC
GGTCGCAGCCACGTCGCCGAAGCACTGCAATATCGGCCATCAGCACCCAGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Legionella pneumophila str. Paris

50.202

99.799

0.501
  comM Legionella pneumophila strain ERS1305867

50.202

99.799

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

100

0.465

Multiple sequence alignment