Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   AB3Y97_RS07200 Genome accession   NZ_OZ061310
Coordinates   1434908..1436047 (-) Length   379 a.a.
NCBI ID   WP_367301149.1    Uniprot ID   -
Organism   Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1429908..1441047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y97_RS07175 mutY 1429996..1431018 (-) 1023 WP_367301148.1 A/G-specific adenine glycosylase -
  AB3Y97_RS07180 - 1431142..1431285 (+) 144 WP_014974929.1 hypothetical protein -
  AB3Y97_RS07185 - 1431425..1432822 (+) 1398 WP_014974930.1 DHA2 family efflux MFS transporter permease subunit -
  AB3Y97_RS07190 thiD 1432888..1433697 (-) 810 WP_135197844.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AB3Y97_RS07195 rlmH 1433775..1434254 (-) 480 WP_014974932.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AB3Y97_RS07200 htrA 1434908..1436047 (-) 1140 WP_367301149.1 S1C family serine protease Regulator
  AB3Y97_RS07205 yycI 1436111..1436896 (-) 786 WP_367301150.1 two-component system regulatory protein YycI -
  AB3Y97_RS07210 yycH 1436927..1438231 (-) 1305 WP_367301151.1 two-component system activity regulator YycH -
  AB3Y97_RS07215 walK 1438221..1440092 (-) 1872 WP_014974936.1 cell wall metabolism sensor histidine kinase WalK -
  AB3Y97_RS07220 yycF 1440224..1440931 (-) 708 WP_014974937.1 response regulator YycF -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 39545.03 Da        Isoelectric Point: 9.7210

>NTDB_id=1165773 AB3Y97_RS07200 WP_367301149.1 1434908..1436047(-) (htrA) [Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809]
MKQYSLTKIVLTGIIAGVIGGGALLYGQRGVENLQTSTQKVNTKASETSTIPKNATATTAYDKISGAVVSVLNFSQTGQR
RYEESSEGSGVIYKKAGDSAYIVTNNHVISGASKIQVMMHDGKKVEASLVGKDIMTDLAVLKMDAKNVTVTASFGDSNKI
QVGQKVLAIGSPLGSQYASSVTQGIISAKKRLVEASSENGQSYGGSTVIQTDAAINPGNSGGPLINFAGQVIGINSMKLS
SSSSGTSVEGMGFAIPSDQVVNIVNELVKNGKITRPAIGISLVELSEITVDDQKALLKIPETVTGGVVVMGTTDNGPAAK
AGLKKYDVITAIEGKTVAGQADLREELYKHKLGDTISVTYYHQATKHTVNIKLTQKLGS

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1165773 AB3Y97_RS07200 WP_367301149.1 1434908..1436047(-) (htrA) [Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809]
ATGAAACAATATTCATTAACAAAAATCGTATTAACTGGTATCATCGCCGGTGTTATCGGTGGTGGCGCATTATTATATGG
GCAACGCGGTGTTGAAAATTTGCAAACATCGACACAAAAGGTTAACACAAAGGCTAGTGAAACTAGTACTATCCCCAAAA
ACGCTACAGCCACAACGGCTTATGATAAAATCTCTGGTGCTGTTGTTTCAGTATTAAATTTTTCACAAACTGGTCAGAGA
CGCTATGAAGAGTCATCTGAAGGTTCTGGTGTGATTTACAAGAAAGCCGGCGATTCAGCCTATATCGTGACCAATAATCA
CGTGATTAGCGGTGCCTCTAAGATTCAAGTAATGATGCATGATGGTAAAAAGGTTGAAGCATCATTAGTCGGCAAAGATA
TCATGACTGATTTAGCTGTTTTGAAAATGGATGCCAAAAATGTTACGGTAACGGCATCATTTGGTGATTCAAATAAAATC
CAAGTTGGGCAAAAGGTGTTAGCTATCGGTTCCCCCTTGGGTTCACAGTACGCTTCTTCAGTGACTCAAGGTATCATTTC
TGCCAAAAAACGTTTAGTTGAGGCGAGCTCTGAAAACGGGCAAAGTTATGGCGGATCAACAGTTATTCAAACAGATGCTG
CTATTAATCCTGGTAATTCAGGTGGACCACTGATTAATTTTGCAGGTCAAGTCATTGGTATTAACTCAATGAAATTATCC
TCCTCCTCATCTGGTACGAGCGTTGAAGGGATGGGATTTGCAATACCTTCAGATCAGGTGGTTAACATTGTCAATGAACT
GGTGAAGAATGGTAAAATCACAAGGCCGGCTATTGGTATTAGTTTAGTCGAACTTTCCGAAATAACGGTTGATGACCAAA
AAGCTTTACTGAAAATTCCAGAAACTGTAACAGGTGGTGTCGTGGTCATGGGCACGACGGATAATGGGCCGGCAGCTAAA
GCTGGTTTGAAGAAGTACGACGTGATTACTGCTATTGAAGGTAAAACAGTGGCTGGTCAAGCAGACTTGCGTGAGGAGCT
CTACAAGCATAAATTAGGAGACACAATCAGCGTAACCTACTATCACCAAGCAACCAAGCACACAGTCAATATTAAATTAA
CACAGAAATTAGGAAGCTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(41-375)

Trypsin-like peptidase domain (Trypsin_2)

(88-234)

PDZ domain (PDZ_2)

(276-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

46.787

100

0.48
  htrA Streptococcus mutans UA159

52.059

89.71

0.467
  htrA Streptococcus gordonii str. Challis substr. CH1

46.174

100

0.462
  htrA Streptococcus pneumoniae TIGR4

50.437

90.501

0.456
  htrA Streptococcus pneumoniae D39

50.437

90.501

0.456
  htrA Streptococcus pneumoniae Rx1

50.437

90.501

0.456
  htrA Streptococcus pneumoniae R6

50.437

90.501

0.456

Multiple sequence alignment