Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHH40_RS00055 Genome accession   NZ_OZ035017
Coordinates   7762..9258 (-) Length   498 a.a.
NCBI ID   WP_342220089.1    Uniprot ID   -
Organism   Rickettsiella endosymbiont of Miltochrista miniata isolate 54707     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2762..14258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH40_RS00020 - 3596..3922 (+) 327 WP_342220083.1 multidrug efflux SMR transporter -
  AAHH40_RS00025 - 3957..4304 (-) 348 WP_342220084.1 hypothetical protein -
  AAHH40_RS00030 - 4438..4644 (-) 207 WP_342220085.1 hypothetical protein -
  AAHH40_RS00035 - 4782..5507 (-) 726 WP_342220086.1 rhodanese-like domain-containing protein -
  AAHH40_RS00045 - 5679..6656 (-) 978 WP_342220087.1 biotin--[acetyl-CoA-carboxylase] ligase -
  AAHH40_RS00050 - 6742..7620 (-) 879 WP_342220088.1 Kdo hydroxylase family protein -
  AAHH40_RS00055 comM 7762..9258 (-) 1497 WP_342220089.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHH40_RS00060 - 9436..9708 (-) 273 WP_342220090.1 ubiquinone biosynthesis accessory factor UbiK -
  AAHH40_RS00065 - 9776..11341 (-) 1566 WP_342220091.1 AAA family ATPase -
  AAHH40_RS00070 cfa 11456..12601 (+) 1146 WP_342220092.1 cyclopropane fatty acyl phospholipid synthase -
  AAHH40_RS00075 - 12796..13335 (+) 540 WP_342220821.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54928.88 Da        Isoelectric Point: 9.5065

>NTDB_id=1164053 AAHH40_RS00055 WP_342220089.1 7762..9258(-) (comM) [Rickettsiella endosymbiont of Miltochrista miniata isolate 54707]
MSLAIVQTRANAGIQALPVTVETHISNGLPSLSIVGLPEATVKGSRDRVRSAIINAQFEFPARRITINLAPADLPKQGGR
FDLPIALSILAASNQIPSNSLAQYEFIGELGLSGELRCVSGIIPFALAAQKANHTIIVPLENAQEANFIKKMSILPAKNI
LQICSHFHGRELLSPYNAEYPKLKDRELPDLSDVYGQAHAKRALEICAAGRHSLLMIGPPGTGKTMLASRLISLLPLLSD
EEALELAAIHSINGQALELNTWKFPPFRRPHHTASNIALVGGGSPPRPGEISLAHHGVLFLDELPEFNRQALEALREPLE
SGNITISRAARQAEFPANFQLVAAMNPCPCGHLGNQLNQCVCTSQQIQRYRKKLSAPFLDRIDMCIEVNPLPKTYFLQPC
KEENSAIVRIRVKKAQIRQLEKLGKLNHNLTGKLLESACKLSNKDHKILENALEKFQLSTRAYHRILRIARTIADLTECE
KIKISHLMEALSYRIIKK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1164053 AAHH40_RS00055 WP_342220089.1 7762..9258(-) (comM) [Rickettsiella endosymbiont of Miltochrista miniata isolate 54707]
ATGTCATTAGCTATTGTGCAAACGCGTGCAAATGCGGGTATTCAGGCGCTTCCTGTTACTGTTGAAACTCACATATCAAA
TGGTTTACCTAGCTTATCTATTGTTGGACTCCCTGAAGCAACCGTCAAGGGAAGTCGAGATCGTGTGCGTAGCGCTATAA
TTAATGCGCAATTTGAATTTCCTGCTCGACGAATCACTATCAATCTCGCTCCTGCTGATCTTCCTAAACAAGGAGGGCGA
TTTGATTTGCCAATTGCATTAAGCATTCTGGCCGCATCTAATCAGATACCAAGTAATTCGTTAGCGCAATATGAATTTAT
CGGTGAGCTCGGATTATCGGGAGAACTTCGATGCGTTTCCGGTATCATACCTTTTGCTTTAGCAGCACAAAAAGCCAACC
ACACTATTATAGTGCCCTTAGAAAATGCTCAAGAAGCTAATTTCATTAAAAAAATGAGCATTTTACCTGCTAAAAATATT
TTACAAATTTGCTCACATTTCCACGGAAGAGAACTTTTATCCCCTTATAATGCAGAATACCCTAAACTTAAGGACCGTGA
ATTACCTGATCTATCTGATGTATACGGTCAGGCTCATGCTAAGCGAGCTTTAGAAATTTGCGCTGCGGGAAGGCACAGTT
TATTAATGATAGGCCCTCCGGGCACTGGAAAAACGATGCTTGCCTCTCGCTTGATTAGTTTATTACCGTTACTTAGTGAT
GAAGAAGCTCTAGAGCTTGCTGCGATACATTCAATCAATGGACAAGCCCTGGAATTAAATACTTGGAAATTTCCTCCTTT
TCGTAGGCCGCATCACACCGCTTCAAACATAGCATTAGTAGGAGGAGGGAGTCCTCCACGACCAGGAGAAATATCATTAG
CACATCATGGTGTTTTATTTCTGGATGAATTACCCGAGTTTAATCGCCAAGCACTAGAAGCTTTGCGAGAACCTTTAGAA
TCAGGAAATATAACTATCTCACGTGCAGCTAGACAAGCTGAATTTCCAGCTAATTTTCAATTAGTTGCTGCCATGAATCC
ATGCCCGTGCGGACACTTAGGTAACCAATTGAATCAATGTGTGTGCACGTCCCAACAAATTCAACGTTACCGTAAAAAGT
TATCTGCACCTTTTTTAGATCGTATTGATATGTGTATTGAAGTAAACCCATTACCAAAGACTTATTTTCTACAACCATGC
AAAGAGGAAAATAGCGCAATCGTTCGAATACGGGTAAAAAAAGCGCAGATCAGACAACTGGAAAAATTGGGAAAACTTAA
TCATAATTTAACCGGTAAACTATTAGAAAGCGCTTGTAAACTATCAAATAAAGATCATAAAATTTTAGAAAATGCCTTAG
AAAAATTTCAACTTTCAACACGTGCATACCATCGAATTTTACGTATAGCGCGCACCATTGCGGATTTAACAGAATGTGAA
AAAATTAAAATCTCGCATTTAATGGAAGCCTTAAGTTACAGGATTATTAAAAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

55.131

99.799

0.55
  comM Legionella pneumophila strain ERS1305867

55.131

99.799

0.55
  comM Glaesserella parasuis strain SC1401

53.953

100

0.548
  comM Haemophilus influenzae Rd KW20

54.4

100

0.546
  comM Vibrio cholerae strain A1552

54.309

100

0.544
  comM Vibrio campbellii strain DS40M4

53.106

100

0.532
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.44

Multiple sequence alignment