Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABNT83_RS09115 Genome accession   NZ_OZ026884
Coordinates   1938507..1940039 (+) Length   510 a.a.
NCBI ID   WP_348757261.1    Uniprot ID   -
Organism   Candidatus Methylocalor cossyra isolate MeCH1-AG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1933507..1945039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNT83_RS09095 (MECH1_V1_1899) amt 1933867..1935276 (-) 1410 WP_348757257.1 ammonium transporter -
  ABNT83_RS09100 (MECH1_V1_1900) glnK 1935318..1935656 (-) 339 WP_348757258.1 P-II family nitrogen regulator -
  ABNT83_RS09105 (MECH1_V1_1901) - 1936021..1938111 (+) 2091 WP_348757259.1 EAL domain-containing protein -
  ABNT83_RS09110 (MECH1_V1_1902) - 1938240..1938491 (+) 252 WP_348757260.1 accessory factor UbiK family protein -
  ABNT83_RS09115 (MECH1_V1_1903) comM 1938507..1940039 (+) 1533 WP_348757261.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABNT83_RS09120 (MECH1_V1_1904) - 1940173..1941171 (+) 999 WP_348757262.1 class I fructose-bisphosphate aldolase -
  ABNT83_RS09125 (MECH1_V1_1905) prlC 1941313..1943358 (+) 2046 WP_348759922.1 oligopeptidase A -
  ABNT83_RS09130 - 1943421..1943621 (-) 201 WP_348757263.1 DUF2795 domain-containing protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54572.99 Da        Isoelectric Point: 8.7634

>NTDB_id=1163297 ABNT83_RS09115 WP_348757261.1 1938507..1940039(+) (comM) [Candidatus Methylocalor cossyra isolate MeCH1-AG]
MSLAVVYTRGRQGIEAPLVTVEVHISNGLPGLSIVGLPETAVKESKDRVRGALLNCGFQFPMQRITVNMAPADIPKEGGR
FDLAIALGILAASGQVRDEPLRELECVGELSLGGELRPVSGVLPVALQARAAGRALIVPKDNAGEAALLDAVRVLPAAHL
LEVCAHLNGTARIQFQPPALAPSTVEDPLDFADVHGHFQAKRALEVAAAGKHNLLMLGPPGTGKSMLAARLPSILPPLSD
QEALESAAIASVSGQPFDPRQWRRPPFRAPHHTASAPALVGGGGNPRPGEISLAHNGILFLDELPEFDRKVLEVLREPLE
TGAITISRAARQVDFPARFQLIAAMNPCPCGYLGDASGRCRCTAEQVARYRGRLSGPLLDRIDIHLEVPRVSHELLRHGS
PGGEETSAAIRARVVAARQRAMARTGCPNAWLTPQQIKRVCALDDAGHRLLEHAMDRLGLSHRAYHRILKLARTIADLAG
SEAITPAHLSEAIGYRRLDRMARSPVGMRG

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1163297 ABNT83_RS09115 WP_348757261.1 1938507..1940039(+) (comM) [Candidatus Methylocalor cossyra isolate MeCH1-AG]
ATGTCCCTGGCCGTCGTTTATACCCGGGGCCGGCAAGGCATCGAAGCCCCGCTGGTCACGGTCGAGGTCCATATTTCCAA
CGGCCTGCCGGGGCTTTCCATCGTCGGTCTGCCGGAAACCGCGGTGAAGGAGAGCAAAGACCGGGTGCGGGGCGCCCTGC
TCAACTGCGGGTTCCAGTTCCCCATGCAGCGCATCACGGTCAACATGGCGCCCGCCGACATCCCCAAGGAGGGTGGGCGC
TTCGATCTGGCCATCGCCTTGGGGATCCTGGCCGCCTCCGGCCAGGTGCGGGACGAGCCCTTGCGGGAGCTGGAGTGCGT
GGGCGAGTTGTCCCTAGGTGGGGAGCTGCGCCCGGTGAGCGGGGTGCTGCCGGTCGCGCTTCAGGCCCGCGCCGCCGGGC
GAGCATTGATCGTGCCCAAGGACAATGCCGGCGAGGCGGCGCTGCTGGACGCGGTGAGGGTCCTGCCGGCGGCCCATCTA
TTGGAAGTGTGCGCCCATCTCAACGGAACAGCCCGGATCCAATTCCAGCCGCCCGCGCTGGCGCCCTCGACGGTCGAGGA
CCCCCTCGATTTCGCCGATGTGCATGGCCATTTTCAGGCCAAGCGCGCCCTGGAGGTGGCGGCGGCGGGTAAGCACAATC
TGCTGATGCTCGGCCCGCCCGGCACCGGCAAGTCCATGCTGGCGGCCCGCCTGCCCAGTATCCTGCCGCCCTTGTCCGAC
CAGGAAGCCTTGGAAAGCGCTGCCATTGCCTCGGTCAGCGGGCAGCCGTTTGACCCGCGCCAGTGGCGGCGGCCGCCGTT
CCGAGCCCCCCATCACACCGCCTCGGCCCCGGCGCTGGTGGGGGGCGGTGGCAATCCCAGACCGGGCGAGATTTCCCTGG
CCCACAACGGGATCCTGTTCCTGGACGAGCTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTCCTGCGGGAGCCGCTGGAG
ACCGGAGCCATCACCATCTCCCGGGCGGCCCGACAGGTGGACTTCCCGGCCCGCTTCCAGCTCATTGCGGCCATGAATCC
CTGTCCCTGCGGCTACCTGGGAGATGCCTCGGGCCGCTGCCGCTGCACCGCGGAGCAAGTGGCCCGCTACCGGGGGCGGC
TATCGGGACCGTTACTGGACCGCATCGACATCCATCTGGAAGTGCCCAGGGTATCCCACGAGCTGCTGCGCCATGGCTCC
CCGGGCGGCGAGGAGACCAGCGCTGCCATCCGCGCCCGGGTGGTGGCGGCCAGGCAGCGGGCCATGGCGCGCACCGGCTG
CCCCAATGCCTGGTTGACCCCACAGCAAATCAAACGGGTGTGCGCGCTGGACGACGCCGGCCACCGGCTTCTGGAGCACG
CCATGGACCGGCTGGGTTTGTCCCACCGCGCCTATCATCGCATTTTGAAGCTGGCGCGCACCATCGCCGATCTGGCCGGG
TCAGAGGCCATCACTCCGGCCCATCTGAGCGAGGCCATCGGTTATAGGCGGCTGGACCGGATGGCCAGGAGCCCGGTCGG
CATGCGGGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.467

98.627

0.547
  comM Vibrio campbellii strain DS40M4

54.871

98.627

0.541
  comM Haemophilus influenzae Rd KW20

52.539

100

0.527
  comM Glaesserella parasuis strain SC1401

53.069

99.02

0.525
  comM Legionella pneumophila str. Paris

50.905

97.451

0.496
  comM Legionella pneumophila strain ERS1305867

50.905

97.451

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.379

100

0.478

Multiple sequence alignment