Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACL18_RS00050 Genome accession   NZ_OZ026451
Coordinates   7976..9472 (-) Length   498 a.a.
NCBI ID   WP_339050507.1    Uniprot ID   -
Organism   Rickettsiella endosymbiont of Xylota segnis isolate 54706     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2976..14472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACL18_RS00020 - 3592..3915 (+) 324 WP_339050498.1 multidrug efflux SMR transporter -
  AACL18_RS00025 - 4423..4641 (-) 219 WP_339050500.1 hypothetical protein -
  AACL18_RS00030 - 4744..5481 (-) 738 WP_339050502.1 rhodanese-like domain-containing protein -
  AACL18_RS00040 - 5894..6880 (-) 987 WP_339050503.1 biotin--[acetyl-CoA-carboxylase] ligase -
  AACL18_RS00045 - 6968..7846 (-) 879 WP_339050505.1 Kdo hydroxylase family protein -
  AACL18_RS00050 comM 7976..9472 (-) 1497 WP_339050507.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACL18_RS00055 - 9523..9807 (-) 285 WP_339050509.1 ubiquinone biosynthesis accessory factor UbiK -
  AACL18_RS00060 - 9872..11440 (-) 1569 WP_339050510.1 AAA family ATPase -
  AACL18_RS00065 cfa 11555..12700 (+) 1146 WP_339050512.1 cyclopropane fatty acyl phospholipid synthase -
  AACL18_RS00070 - 13097..13636 (+) 540 WP_339051651.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55307.06 Da        Isoelectric Point: 9.7185

>NTDB_id=1163123 AACL18_RS00050 WP_339050507.1 7976..9472(-) (comM) [Rickettsiella endosymbiont of Xylota segnis isolate 54706]
MSIAIVQTRANAGIEALPVTVETHISNGLPSLSIVGLPETTVKGTKDRVRSAIINAQFQFPVRRITINLAPADLPKQGGR
FDLPIALSILAASNQIPSSMLEQYEFIGELGLSGELRPVSGILPFSLAAQKANHSIVLPFENAQEASFNKKANILLAKNI
LQICSHLHGREPLAHYHAEFPELKHRELPDLSEVYGQAHAKRALEICAAGKHNLLMIGPPGIGKTMLASRLINLLPLLND
DDALELAAIHSIRGQSLELNTWRFPPFRRPHHTASSIALVGGGNPPQPGEISLAHHGVLFLDELPEFDRRVLEALREPLE
SGNITISRATKQTEFPANFQLVAAMNPCPCGHFGSQINQCICMPHQIQRYRKKLSAPFLDRIDVCIELNALPKTYLFQQS
KEENSKTVRDRVKKAQTLQLKKFGKLNHKLSGKNFESSCMLSNKNQKILQNSLEKFQLSTRAYHRILRIARTIADLTESE
KIETSHLMEALSYKLIKK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1163123 AACL18_RS00050 WP_339050507.1 7976..9472(-) (comM) [Rickettsiella endosymbiont of Xylota segnis isolate 54706]
ATGTCGATAGCTATTGTACAAACTCGTGCAAATGCTGGTATTGAAGCGCTTCCTGTTACTGTTGAAACTCATATATCAAA
TGGTTTACCTAGCTTATCTATTGTTGGGCTTCCTGAAACGACAGTAAAAGGAACTAAGGATCGAGTACGTAGCGCTATAA
TTAATGCACAATTTCAATTTCCTGTTCGGCGAATAACTATCAATCTCGCTCCGGCTGATCTTCCCAAACAAGGCGGCAGA
TTTGATTTACCCATTGCATTAAGTATTCTGGCCGCTTCTAATCAGATTCCTAGCAGTATGCTTGAGCAGTATGAATTTAT
CGGTGAGCTAGGACTTTCCGGTGAACTTCGACCCGTATCTGGCATTTTACCTTTTTCATTAGCAGCACAAAAAGCTAACC
ATAGTATTGTATTGCCCTTCGAAAATGCTCAAGAAGCCAGCTTCAATAAAAAAGCCAACATTTTACTTGCAAAAAATATT
TTACAAATTTGTTCACATTTACATGGACGAGAACCCTTAGCACATTACCATGCAGAATTTCCTGAGCTTAAACATCGTGA
ATTACCTGATTTATCTGAAGTGTATGGCCAGGCGCATGCAAAGCGAGCTTTAGAAATTTGCGCTGCAGGAAAACATAATT
TATTAATGATCGGTCCTCCGGGCATTGGAAAAACGATGCTTGCTTCGCGTTTGATAAACTTATTACCTTTACTCAATGAT
GATGACGCTCTTGAGCTTGCTGCTATACATTCTATCAGAGGCCAATCCCTGGAATTAAACACTTGGAGATTTCCGCCCTT
TCGTAGACCACATCACACCGCTTCAAGCATCGCACTGGTTGGAGGAGGTAATCCCCCTCAACCAGGAGAGATATCATTAG
CCCATCATGGCGTTTTATTCTTGGATGAATTACCCGAATTTGATCGCCGAGTCTTAGAAGCGTTGCGCGAACCTTTAGAA
TCAGGGAATATAACTATCTCACGCGCAACTAAACAAACTGAATTTCCAGCTAATTTCCAGTTAGTTGCTGCTATGAACCC
TTGTCCGTGTGGACATTTTGGTAGTCAGATAAATCAATGTATATGTATGCCACACCAAATTCAACGGTATCGCAAAAAAT
TATCTGCACCTTTTTTGGATCGTATAGATGTTTGCATTGAGCTAAATGCGTTACCAAAAACTTATCTTTTTCAACAAAGC
AAGGAGGAAAATAGTAAGACAGTTCGAGATCGAGTTAAGAAAGCTCAAACTTTACAACTGAAAAAATTTGGAAAACTTAA
TCATAAGTTATCCGGTAAAAACTTCGAAAGTTCATGCATGTTATCAAATAAAAATCAAAAAATTTTACAAAATTCCTTAG
AAAAATTTCAACTTTCAACACGTGCTTATCATCGAATTTTGCGTATAGCACGTACCATCGCAGATTTAACAGAAAGTGAA
AAAATCGAAACTTCGCACTTAATGGAAGCTTTAAGTTATAAACTTATTAAAAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

53.831

99.598

0.536
  comM Legionella pneumophila strain ERS1305867

53.831

99.598

0.536
  comM Haemophilus influenzae Rd KW20

52.305

100

0.524
  comM Glaesserella parasuis strain SC1401

51.889

100

0.524
  comM Vibrio campbellii strain DS40M4

51.69

100

0.522
  comM Vibrio cholerae strain A1552

51.503

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.944

99.598

0.428

Multiple sequence alignment