Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Z042_RS05015 Genome accession   NZ_CP007044
Coordinates   1148230..1149753 (-) Length   507 a.a.
NCBI ID   WP_024910650.1    Uniprot ID   W0LDQ5
Organism   Chania multitudinisentens RB-25     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1143230..1154753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Z042_RS05005 (Z042_10990) hdfR 1146914..1147741 (-) 828 WP_024910652.1 HTH-type transcriptional regulator HdfR -
  Z042_RS05010 (Z042_10985) - 1147861..1148199 (+) 339 WP_024910651.1 DUF413 domain-containing protein -
  Z042_RS05015 (Z042_10980) comM 1148230..1149753 (-) 1524 WP_024910650.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Z042_RS24795 ilvL 1150181..1150279 (+) 99 WP_071882789.1 ilv operon leader peptide -
  Z042_RS05020 (Z042_10975) ilvG 1150422..1152068 (+) 1647 WP_024910649.1 acetolactate synthase 2 catalytic subunit -
  Z042_RS05025 (Z042_10970) ilvM 1152065..1152322 (+) 258 WP_024910648.1 acetolactate synthase 2 small subunit -
  Z042_RS05030 (Z042_10965) - 1152345..1153271 (+) 927 WP_024910647.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54549.68 Da        Isoelectric Point: 8.5117

>NTDB_id=116297 Z042_RS05015 WP_024910650.1 1148230..1149753(-) (comM) [Chania multitudinisentens RB-25]
MSLAVIYTRATLGVQAPSVTVEVHISNGLPGLALVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPTDQLARYEFLGELALSGTLRAVNGAIPAAIAATEAGRGLILAAANGKEAGLLPDNNTRVAEHL
LEVCAFLQGKSELPVAVAPPVTENSAETADLQEIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRINSLLPPLSD
QEALESIAVASLLHHPDGTLPWRQRPFRTPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRATAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGILGKQRSS
GESSQQVRQRVLQARERQLTRAGKVNALLNNREVARDCHLPAADADFLEATLNTLGLSVRAWHRILKVARTLADLAGEKN
ISKRHLSEALSYRSMDRLLLQLHHSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=116297 Z042_RS05015 WP_024910650.1 1148230..1149753(-) (comM) [Chania multitudinisentens RB-25]
ATGTCACTGGCGGTTATCTATACCCGTGCCACCCTCGGTGTCCAAGCGCCATCGGTCACTGTGGAAGTTCATATCAGCAA
TGGGTTACCTGGCCTGGCGTTGGTTGGCCTGCCGGAAACCACGGTAAAAGAGGCACGCGATCGGGTGCGCAGCGCACTGA
TTAACAACGGTTTCACCTTTCCGGCAAAACGGATCACCGTCAACTTGGCACCCGCTGATTTGCCTAAAGAAGGCGGGCGC
TACGATTTACCTATTGCACTGGCGATCCTCGCCGCTTCAGAACAACTTCCCACAGATCAACTGGCCCGCTACGAATTTCT
TGGAGAGCTGGCGCTTTCTGGCACACTAAGAGCCGTCAACGGGGCAATCCCTGCCGCGATAGCAGCAACAGAAGCGGGCC
GGGGATTGATTCTGGCTGCGGCCAACGGCAAAGAAGCAGGTTTGCTGCCTGATAACAATACGCGAGTAGCAGAACACTTG
CTGGAGGTTTGCGCATTTCTACAAGGCAAAAGCGAACTACCAGTTGCTGTTGCCCCACCAGTTACTGAAAACTCAGCGGA
AACCGCCGACCTGCAAGAGATTATCGGCCAGGAGCAGGCAAAACGCGCACTGGAAATTGCTGCGGCTGGCGGCCATAACC
TGTTGCTACTCGGCCCACCAGGCACCGGTAAAACCATGCTGGCTAGCCGAATCAATAGCCTGTTGCCCCCGCTAAGCGAT
CAGGAAGCCCTGGAGAGCATCGCCGTTGCCAGTTTGCTGCATCACCCTGATGGAACGCTACCCTGGCGGCAACGGCCATT
TCGTACCCCCCATCACAGCGCCTCTATGGCTGCATTGGTTGGGGGTGGCTCGTTACCCCGACCAGGGGAAATATCTATGG
CGCATAATGGTGTTCTGTTTCTTGATGAGCTGCCAGAATTCGAGCGGCGGGTGCTAGATGCCCTGCGTGAACCGTTGGAG
TCGGGTGAAATTGTGATTTCACGCGCCACTGCCAAAGTGCGGTTTCCTGCTCGAGTACAGCTTATCGCAGCCATGAATCC
CAGCCCGACCGGCCATTATCAAGGAATACATAACCGCACACCACCACAGCAAATCCTGCGTTATCTTGGGCGGCTCTCCG
GTCCGTTTCTTGATCGCTTTGATTTATCGATTGAAGTGCCACTTCTTCCCCCAGGGATACTGGGTAAACAACGCAGCTCG
GGTGAAAGCAGCCAACAAGTTCGCCAGCGGGTATTGCAAGCCCGCGAACGACAATTGACACGGGCAGGAAAGGTGAATGC
GCTGTTGAATAACCGTGAAGTGGCTCGAGATTGCCACCTGCCAGCGGCAGATGCGGATTTTCTTGAAGCAACGTTGAATA
CATTGGGGTTGTCAGTTCGCGCCTGGCACCGCATCCTGAAAGTAGCACGCACGTTGGCAGATTTAGCTGGAGAGAAGAAT
ATTAGTAAACGCCATTTGAGTGAAGCTCTCAGCTATCGCAGTATGGATCGGCTTTTATTACAACTGCACCATAGCCTAGA
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0LDQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.613

99.803

0.655
  comM Vibrio cholerae strain A1552

65.139

99.014

0.645
  comM Glaesserella parasuis strain SC1401

64.047

100

0.643
  comM Vibrio campbellii strain DS40M4

64.741

99.014

0.641
  comM Legionella pneumophila str. Paris

50.699

98.817

0.501
  comM Legionella pneumophila strain ERS1305867

50.699

98.817

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.967

100

0.473

Multiple sequence alignment