Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABGT36_RS11660 Genome accession   NZ_OZ007017
Coordinates   2341231..2341479 (+) Length   82 a.a.
NCBI ID   WP_346678126.1    Uniprot ID   -
Organism   MAG: Erysipelatoclostridium sp. An173 isolate 6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2336231..2346479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT36_RS11620 - 2336263..2336982 (-) 720 WP_346678118.1 N-acetylmuramoyl-L-alanine amidase -
  ABGT36_RS11625 - 2337306..2337845 (+) 540 WP_346678120.1 GNAT family protein -
  ABGT36_RS11630 - 2337917..2338192 (+) 276 WP_346678122.1 hypothetical protein -
  ABGT36_RS11635 - 2338213..2338670 (+) 458 Protein_2243 ABC transporter transmembrane domain-containing protein -
  ABGT36_RS11640 - 2338845..2339153 (+) 309 WP_346678650.1 ATP-binding cassette domain-containing protein -
  ABGT36_RS11645 - 2339263..2339310 (+) 48 Protein_2245 hypothetical protein -
  ABGT36_RS11650 - 2339326..2339610 (+) 285 WP_346678124.1 ABC transporter ATP-binding protein -
  ABGT36_RS11655 - 2339815..2341176 (+) 1362 WP_346678125.1 ABC transporter ATP-binding protein -
  ABGT36_RS11660 rcrQ 2341231..2341479 (+) 249 WP_346678126.1 hypothetical protein Regulator
  ABGT36_RS11665 - 2341530..2342831 (-) 1302 WP_346678128.1 ABC transporter ATP-binding protein -
  ABGT36_RS11670 - 2342803..2344131 (-) 1329 WP_346678130.1 hypothetical protein -
  ABGT36_RS11675 - 2344357..2345352 (-) 996 WP_346678132.1 sensor histidine kinase -
  ABGT36_RS11680 - 2345349..2345618 (-) 270 WP_296882189.1 winged helix-turn-helix domain-containing protein -
  ABGT36_RS11685 - 2345724..2346470 (-) 747 Protein_2253 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 82 a.a.        Molecular weight: 9279.61 Da        Isoelectric Point: 5.5821

>NTDB_id=1162752 ABGT36_RS11660 WP_346678126.1 2341231..2341479(+) (rcrQ) [MAG: Erysipelatoclostridium sp. An173 isolate 6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG]
MILDEATSSIDTRTEAIIQKGMDALMEGRTTFVIAHRLSTVKNADVIIVLDHGRIIERGSHQKLIEQKGQYYQLYTGAFE
LE

Nucleotide


Download         Length: 249 bp        

>NTDB_id=1162752 ABGT36_RS11660 WP_346678126.1 2341231..2341479(+) (rcrQ) [MAG: Erysipelatoclostridium sp. An173 isolate 6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG]
ATGATTTTAGACGAGGCTACTTCTTCAATCGATACTAGAACGGAAGCAATTATTCAAAAAGGAATGGACGCTTTAATGGA
AGGTAGGACAACTTTTGTAATTGCTCATCGTTTATCAACTGTAAAAAACGCAGATGTAATTATTGTACTAGATCATGGGC
GAATTATTGAACGCGGTAGTCATCAAAAATTAATTGAACAAAAAGGTCAATATTATCAATTATATACTGGCGCTTTTGAA
TTAGAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

62.195

100

0.622
  comA Streptococcus gordonii str. Challis substr. CH1

48

91.463

0.439
  comA Streptococcus pneumoniae Rx1

44.595

90.244

0.402
  comA Streptococcus mitis NCTC 12261

44.595

90.244

0.402
  comA Streptococcus pneumoniae R6

44.595

90.244

0.402
  comA Streptococcus pneumoniae TIGR4

44.595

90.244

0.402
  comA Streptococcus pneumoniae D39

44.595

90.244

0.402
  comA/nlmT Streptococcus mutans UA159

43.421

92.683

0.402
  comA Streptococcus mitis SK321

43.243

90.244

0.39

Multiple sequence alignment