Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABGT79_RS12650 Genome accession   NZ_OZ007001
Coordinates   2980782..2981297 (+) Length   171 a.a.
NCBI ID   WP_346666476.1    Uniprot ID   -
Organism   MAG: uncultured Mailhella sp. isolate metabat2_pooled_hifiasm.920 MAG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2975782..2986297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT79_RS12630 - 2976679..2977659 (-) 981 WP_346666472.1 lytic murein transglycosylase -
  ABGT79_RS12635 - 2977952..2978494 (+) 543 WP_346666473.1 hypothetical protein -
  ABGT79_RS12640 - 2978522..2978923 (+) 402 WP_346666474.1 VOC family protein -
  ABGT79_RS12645 - 2979224..2980258 (-) 1035 WP_346666475.1 branched-chain amino acid aminotransferase -
  ABGT79_RS12650 ssb 2980782..2981297 (+) 516 WP_346666476.1 single-stranded DNA-binding protein Machinery gene
  ABGT79_RS12660 - 2982034..2982633 (-) 600 WP_346666477.1 GDSL-type esterase/lipase family protein -
  ABGT79_RS12665 - 2982876..2983430 (+) 555 WP_346666478.1 hypothetical protein -
  ABGT79_RS12670 - 2983432..2983791 (+) 360 WP_346666479.1 hypothetical protein -
  ABGT79_RS12675 - 2983976..2984815 (-) 840 WP_346666480.1 hypothetical protein -
  ABGT79_RS12680 - 2984881..2985591 (-) 711 WP_346666481.1 lytic transglycosylase domain-containing protein -
  ABGT79_RS12685 - 2985595..2986020 (-) 426 WP_294486008.1 ATP-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19385.38 Da        Isoelectric Point: 7.1663

>NTDB_id=1162721 ABGT79_RS12650 WP_346666476.1 2980782..2981297(+) (ssb) [MAG: uncultured Mailhella sp. isolate metabat2_pooled_hifiasm.920 MAG]
MLNKVMIIGHLGADPELRYTQSGSPVTTLRIATDESYTDRDGNRVERTEWHRVVVFQRAAENCNQYLRKGSLVYVEGKLS
TRKWQDQNGQDRYTTEIRADRVQFLDRRNGGAPADGDNMGYAPRQSAPRPAQSSRPAPQRRAPQQQPQQDSYEDLGPAFP
SEASTMDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1162721 ABGT79_RS12650 WP_346666476.1 2980782..2981297(+) (ssb) [MAG: uncultured Mailhella sp. isolate metabat2_pooled_hifiasm.920 MAG]
ATGTTGAATAAAGTCATGATCATCGGCCATCTCGGCGCTGACCCTGAACTGCGCTATACCCAGAGCGGCTCTCCCGTGAC
CACGCTGCGTATTGCTACGGATGAATCATATACCGACAGGGACGGCAATCGCGTGGAGCGCACGGAATGGCATCGCGTTG
TCGTGTTCCAGCGCGCGGCGGAAAACTGCAATCAGTACCTCCGCAAGGGCAGCCTGGTGTACGTGGAAGGCAAGCTTTCC
ACCCGCAAGTGGCAGGATCAGAACGGTCAGGACCGCTACACCACGGAAATACGCGCCGACCGCGTGCAGTTCCTTGATCG
CCGCAACGGCGGCGCTCCCGCCGACGGCGACAACATGGGCTATGCGCCCCGGCAGTCGGCTCCCCGTCCTGCGCAGTCGT
CCCGTCCCGCTCCGCAGCGTCGCGCGCCTCAGCAGCAGCCGCAGCAGGACAGCTATGAAGATCTCGGTCCCGCCTTCCCG
TCGGAAGCGAGTACCATGGACGACATTCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.876

100

0.52
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.468
  ssb Neisseria meningitidis MC58

44.318

100

0.456
  ssb Vibrio cholerae strain A1552

47.771

91.813

0.439
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.227

100

0.363

Multiple sequence alignment