Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH05_RS23930 Genome accession   NZ_OY970410
Coordinates   5011550..5013073 (+) Length   507 a.a.
NCBI ID   WP_159318777.1    Uniprot ID   -
Organism   Serratia marcescens isolate SERG     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5006550..5018073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH05_RS23905 (SERG_04714) - 5006750..5007676 (-) 927 WP_033636413.1 branched-chain amino acid transaminase -
  AACH05_RS23910 (SERG_04715) ilvM 5007700..5007957 (-) 258 WP_038874702.1 acetolactate synthase 2 small subunit -
  AACH05_RS23915 (SERG_04716) ilvG 5007954..5009600 (-) 1647 WP_213873526.1 acetolactate synthase 2 catalytic subunit -
  AACH05_RS23920 ilvL 5009743..5009841 (-) 99 WP_013814970.1 ilv operon leader peptide -
  AACH05_RS23925 (SERG_04717) - 5009975..5011207 (-) 1233 WP_060438303.1 MFS transporter -
  AACH05_RS23930 (SERG_04718) comM 5011550..5013073 (+) 1524 WP_159318777.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH05_RS23935 (SERG_04719) - 5013102..5013440 (-) 339 WP_019455272.1 DUF413 domain-containing protein -
  AACH05_RS23940 (SERG_04720) hdfR 5013560..5014387 (+) 828 WP_060425370.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54391.63 Da        Isoelectric Point: 7.8605

>NTDB_id=1162301 AACH05_RS23930 WP_159318777.1 5011550..5013073(+) (comM) [Serratia marcescens isolate SERG]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSHSHTARHL
LEVCAFLLGQGELPVAATPPAADTACDNADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
HEALESLAVASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSQRKTH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
LNRSHLCEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1162301 AACH05_RS23930 WP_159318777.1 5011550..5013073(+) (comM) [Serratia marcescens isolate SERG]
ATGTCATTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGTCTGCCGGAAACCACGGTGAAAGAGGCGCGCGATCGGGTGCGCAGTGCCCTGA
TCAACAACGGTTTCACCTTTCCTGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGACGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCACTGTCCGGCGCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GGCAACTGATCCTCTCGACGGACAACGCCGCCGAAGTCGGCCTGATTGCGCAGTCGCACTCCCATACCGCCCGGCACCTG
TTGGAAGTCTGTGCCTTTCTGCTCGGCCAGGGCGAGCTGCCGGTGGCGGCCACGCCTCCCGCTGCGGACACCGCCTGCGA
CAACGCCGATCTGCGCGACATCATCGGCCAGGAACAGGCCAAGCGGGCTCTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGTTGGCCAGCCGCCTCACGGGCTTGCTGCCGCCGCTCACGGAG
CATGAGGCGCTGGAAAGCCTGGCGGTCGCCAGCTTGCAGCATCATATCCCCGCCGCCCTGCCATGGCGCCAGAGGCCGTT
TCGCGCACCGCATCACAGTGCATCGATGGCGGCGTTGGTCGGCGGCGGCTCACTGCCGCGCCCGGGCGAGATCTCTATGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTACCGGAATTCGAGCGTAAGGTGCTGGATGCACTGCGTGAGCCGCTGGAG
TCCGGCGAGATCGTAATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGTTGATTGCGGCAATGAACCC
TAGCCCGACCGGGCATTATCAGGGGTTGCACAATCGCGCCTCACCGCAGCAGGTATTACGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTACCGCCGGGTACGCTCAGTCAGCGGAAAACGCAT
GGAGAGAGCAGTGAGCAGGTGCGGAAGCGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGGAAAGTCAACGC
GCTGTTGAGCAACCGCGAAGTGGAACGTGATTGCGTTCTGCAGGCAGCAGACGCCGAGTTTTTGGAGGCAACATTAAACG
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATTTTGAAAGTTGCGCGCACGCTGGCGGATTTGGCGGGGGATGCGGAG
CTCAACAGGAGCCACCTCTGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAGCTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.483

100

0.655
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.343

99.014

0.637
  comM Legionella pneumophila str. Paris

51.004

98.225

0.501
  comM Legionella pneumophila strain ERS1305867

51.004

98.225

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.882

100

0.45

Multiple sequence alignment