Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AACH05_RS22430 | Genome accession | NZ_OY970410 |
| Coordinates | 4689559..4690089 (-) | Length | 176 a.a. |
| NCBI ID | WP_004936793.1 | Uniprot ID | A0AAW6X7L8 |
| Organism | Serratia marcescens isolate SERG | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4684559..4695089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH05_RS22400 (SERG_04418) | - | 4685621..4686028 (-) | 408 | WP_149571916.1 | VOC family protein | - |
| AACH05_RS22405 (SERG_04419) | - | 4686076..4686744 (-) | 669 | WP_049201475.1 | glutathione S-transferase | - |
| AACH05_RS22410 (SERG_04420) | - | 4686741..4687184 (-) | 444 | WP_047570370.1 | lipocalin-like domain-containing protein | - |
| AACH05_RS22415 (SERG_04421) | - | 4687381..4687641 (+) | 261 | WP_060440954.1 | YdgH/BhsA/McbA-like domain containing protein | - |
| AACH05_RS22420 (SERG_04422) | - | 4687697..4688614 (-) | 918 | WP_049201481.1 | LysR family transcriptional regulator | - |
| AACH05_RS22425 (SERG_04423) | - | 4688747..4689496 (+) | 750 | WP_164105798.1 | 3-oxoacyl-ACP reductase family protein | - |
| AACH05_RS22430 (SERG_04424) | ssb | 4689559..4690089 (-) | 531 | WP_004936793.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| AACH05_RS22435 (SERG_04425) | uvrA | 4690367..4693195 (+) | 2829 | WP_213873950.1 | excinuclease ABC subunit UvrA | - |
| AACH05_RS22440 (SERG_04426) | - | 4693525..4694331 (+) | 807 | WP_204276035.1 | MipA/OmpV family protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18808.71 Da Isoelectric Point: 5.2358
>NTDB_id=1162299 AACH05_RS22430 WP_004936793.1 4689559..4690089(-) (ssb) [Serratia marcescens isolate SERG]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=1162299 AACH05_RS22430 WP_004936793.1 4689559..4690089(-) (ssb) [Serratia marcescens isolate SERG]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGCAAGGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGCAAGGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.243 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
59.14 |
100 |
0.625 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.158 |
100 |
0.364 |