Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | U9966_RS05175 | Genome accession | NZ_OY856306 |
| Coordinates | 1093944..1094402 (+) | Length | 152 a.a. |
| NCBI ID | WP_306346856.1 | Uniprot ID | - |
| Organism | Pasteurella atlantica isolate PAF6K1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1088944..1099402
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U9966_RS05155 | ndk | 1089682..1090098 (+) | 417 | WP_306346853.1 | nucleoside-diphosphate kinase | - |
| U9966_RS05160 | - | 1090106..1091653 (-) | 1548 | WP_322631725.1 | peptide ABC transporter substrate-binding protein | - |
| U9966_RS05165 | - | 1091661..1092311 (-) | 651 | WP_211599304.1 | YchE family NAAT transporter | - |
| U9966_RS05170 | radA | 1092389..1093765 (-) | 1377 | WP_306346855.1 | DNA repair protein RadA | - |
| U9966_RS05175 | pilA | 1093944..1094402 (+) | 459 | WP_306346856.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| U9966_RS05180 | pilB | 1094428..1095825 (+) | 1398 | WP_306346857.1 | GspE/PulE family protein | Machinery gene |
| U9966_RS05185 | pilC | 1095812..1097002 (+) | 1191 | WP_306346858.1 | type II secretion system F family protein | Machinery gene |
| U9966_RS05190 | - | 1097002..1097679 (+) | 678 | WP_306346859.1 | prepilin peptidase | - |
| U9966_RS05195 | coaE | 1097948..1098556 (+) | 609 | WP_306346930.1 | dephospho-CoA kinase | - |
| U9966_RS05200 | yacG | 1098577..1098768 (+) | 192 | WP_211599310.1 | DNA gyrase inhibitor YacG | - |
| U9966_RS05205 | - | 1098795..1099262 (-) | 468 | WP_211599311.1 | Lrp/AsnC family transcriptional regulator | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16159.44 Da Isoelectric Point: 8.0812
>NTDB_id=1162149 U9966_RS05175 WP_306346856.1 1093944..1094402(+) (pilA) [Pasteurella atlantica isolate PAF6K1]
MTKSTLQKNYFKLSQAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASAPYKSDVEICIYNEGTLTNCNGGS
NGIQANKTSTTMKYLKSISAATGVISVQGKGSLEGYGYTLTPTYSNNTITWATSCTGKDSDISIFPAGFCSN
MTKSTLQKNYFKLSQAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASAPYKSDVEICIYNEGTLTNCNGGS
NGIQANKTSTTMKYLKSISAATGVISVQGKGSLEGYGYTLTPTYSNNTITWATSCTGKDSDISIFPAGFCSN
Nucleotide
Download Length: 459 bp
>NTDB_id=1162149 U9966_RS05175 WP_306346856.1 1093944..1094402(+) (pilA) [Pasteurella atlantica isolate PAF6K1]
ATGACAAAAAGTACATTACAAAAAAATTACTTCAAACTTTCACAAGCTTTTACGTTAATTGAATTAATGATCGTGATAGC
CATTATTGCTATTTTAGCAACTATTGCTATCCCTTCTTATACCAGTTATACCCAAAAAGCGGCACTATCAGAGTTATTAA
GTGCTTCTGCACCTTATAAATCAGATGTAGAAATCTGCATTTATAATGAAGGTACTTTAACTAACTGTAATGGTGGTTCA
AACGGTATTCAAGCCAATAAAACCAGCACAACAATGAAATATCTTAAGTCTATTTCAGCTGCCACGGGTGTGATTTCTGT
GCAAGGTAAAGGTTCATTAGAGGGTTATGGCTATACGCTAACCCCAACTTATTCAAATAATACTATTACTTGGGCAACAA
GTTGTACGGGTAAAGATAGTGATATTAGTATTTTCCCTGCAGGCTTTTGTTCAAATTAA
ATGACAAAAAGTACATTACAAAAAAATTACTTCAAACTTTCACAAGCTTTTACGTTAATTGAATTAATGATCGTGATAGC
CATTATTGCTATTTTAGCAACTATTGCTATCCCTTCTTATACCAGTTATACCCAAAAAGCGGCACTATCAGAGTTATTAA
GTGCTTCTGCACCTTATAAATCAGATGTAGAAATCTGCATTTATAATGAAGGTACTTTAACTAACTGTAATGGTGGTTCA
AACGGTATTCAAGCCAATAAAACCAGCACAACAATGAAATATCTTAAGTCTATTTCAGCTGCCACGGGTGTGATTTCTGT
GCAAGGTAAAGGTTCATTAGAGGGTTATGGCTATACGCTAACCCCAACTTATTCAAATAATACTATTACTTGGGCAACAA
GTTGTACGGGTAAAGATAGTGATATTAGTATTTTCCCTGCAGGCTTTTGTTCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
71.631 |
92.763 |
0.664 |
| pilA | Haemophilus influenzae 86-028NP |
58.273 |
91.447 |
0.533 |
| pilA | Haemophilus influenzae Rd KW20 |
52.98 |
99.342 |
0.526 |
| pilA | Vibrio campbellii strain DS40M4 |
37.671 |
96.053 |
0.362 |