Detailed information NTG1162151

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: U9966_RS05185
• Genome accession: NZ_OY856306
• Coordinates: 1095812..1097002 (+)
• Length: 396 a.a.
• NCBI ID: WP_306346858.1
• Uniprot ID: -
• Organism: Pasteurella atlantica isolate PAF6K1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1090812..1102002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U9966_RS05165	-	1091661..1092311 (-)	651	WP_211599304.1	YchE family NAAT transporter	-
U9966_RS05170	radA	1092389..1093765 (-)	1377	WP_306346855.1	DNA repair protein RadA	-
U9966_RS05175	pilA	1093944..1094402 (+)	459	WP_306346856.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
U9966_RS05180	pilB	1094428..1095825 (+)	1398	WP_306346857.1	GspE/PulE family protein	Machinery gene
U9966_RS05185	pilC	1095812..1097002 (+)	1191	WP_306346858.1	type II secretion system F family protein	Machinery gene
U9966_RS05190	-	1097002..1097679 (+)	678	WP_306346859.1	prepilin peptidase	-
U9966_RS05195	coaE	1097948..1098556 (+)	609	WP_306346930.1	dephospho-CoA kinase	-
U9966_RS05200	yacG	1098577..1098768 (+)	192	WP_211599310.1	DNA gyrase inhibitor YacG	-
U9966_RS05205	-	1098795..1099262 (-)	468	WP_211599311.1	Lrp/AsnC family transcriptional regulator	-
U9966_RS05210	-	1099372..1100889 (-)	1518	WP_306346860.1	YfcC family protein	-
U9966_RS05215	arcC	1100992..1101921 (-)	930	WP_306346861.1	carbamate kinase	-

Sequence

Protein

• Length: 396 a.a.
• Molecular weight: 45166.60 Da
• Isoelectric Point: 10.1656

>NTDB_id=1162151 U9966_RS05185 WP_306346858.1 1095812..1097002(+) (pilC) [Pasteurella atlantica isolate PAF6K1]
MKVYEFKYKAINRFSQRQKGILLGTNHQEVENKLLQKGYKDIKIKRNFVIATQPKSEQITQFISQLSLLLNAKITLKQAL
NIVLETTTNIKFYQWLTQVIQLLETGHSFSNSLEILGKYFKPQEIQLIKIAEQSGQLSTIFYNIAKTKEKSEKLAKKVKK
IIFYPVVVLIISIVLSILLLVFIVPQFAELYQAKDKTLPFITQLLFDSSHFLQQDKNRIISMSLLTFIIIFILKKKTTII
AKLKSKILSVTPIFKNIISDNRIIFFCQNIALMQKSGVPLNVALSSFISSKDNDFILQQEIVKIIESLNQGFSFSHSLNS
ALFGDEVIQMVSIGEQSGQLSQMLEHITEITQQRLDHKIDILSQMLEPTLMLVIGSIIGTIIMGLYLPIFDMGALV

Nucleotide

• Length: 1191 bp

>NTDB_id=1162151 U9966_RS05185 WP_306346858.1 1095812..1097002(+) (pilC) [Pasteurella atlantica isolate PAF6K1]
ATGAAAGTATATGAATTTAAATATAAAGCCATTAATCGTTTCTCCCAACGTCAAAAAGGGATATTGTTAGGGACTAATCA
TCAGGAAGTAGAAAATAAGCTTTTGCAGAAAGGCTATAAAGATATAAAAATAAAACGAAACTTTGTTATTGCAACACAGC
CAAAGAGTGAACAAATTACGCAATTTATTAGCCAGTTATCATTATTACTCAATGCTAAAATAACCTTAAAACAAGCGTTA
AATATTGTTTTAGAAACAACTACTAATATTAAATTTTATCAATGGTTAACACAAGTTATTCAATTGCTTGAAACAGGGCA
TTCATTTTCTAATTCATTGGAAATTTTAGGGAAATATTTTAAACCTCAAGAAATACAGTTAATTAAAATTGCAGAACAAA
GCGGTCAGTTATCAACCATTTTTTACAATATTGCTAAAACGAAAGAAAAGTCCGAAAAATTGGCTAAAAAAGTAAAAAAG
ATTATATTTTACCCAGTTGTGGTGCTGATTATTTCTATTGTTCTTTCTATATTACTGCTTGTTTTTATTGTGCCTCAATT
TGCAGAACTCTATCAAGCTAAAGATAAAACCCTTCCATTTATTACTCAGTTATTATTCGATAGTTCTCATTTTTTACAGC
AAGATAAAAATAGGATTATCAGTATGAGTTTGTTAACCTTTATCATTATTTTTATTTTAAAGAAAAAAACAACAATCATC
GCTAAATTAAAATCCAAGATATTATCTGTTACTCCTATTTTTAAAAATATAATAAGTGATAATAGAATTATTTTCTTTTG
TCAAAATATTGCATTAATGCAGAAATCTGGTGTACCACTTAATGTTGCACTCTCTTCTTTTATTTCATCCAAAGATAATG
ATTTTATTTTACAGCAAGAAATCGTCAAAATAATTGAAAGTTTAAATCAAGGATTTTCTTTCTCTCACTCTTTAAATTCC
GCGTTATTTGGCGATGAAGTTATTCAAATGGTGAGTATAGGAGAGCAGAGCGGTCAGTTATCTCAAATGTTAGAGCATAT
TACAGAAATCACGCAACAGCGATTAGATCATAAAATAGATATACTTTCACAAATGTTAGAACCTACATTAATGTTAGTGA
TTGGTTCTATTATAGGTACCATTATTATGGGACTTTATCTTCCTATTTTTGATATGGGAGCCTTAGTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (62-185)

• Type II secretion system (T2SS), protein F (T2SSF) (266-388)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	53.299	99.495	0.53
pilC	Haemophilus influenzae Rd KW20	40.75	100	0.412
pilC	Haemophilus influenzae 86-028NP	40	100	0.404