Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U9966_RS01965 Genome accession   NZ_OY856306
Coordinates   420886..422010 (-) Length   374 a.a.
NCBI ID   WP_306347242.1    Uniprot ID   -
Organism   Pasteurella atlantica isolate PAF6K1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 415886..427010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9966_RS01940 - 416418..416957 (-) 540 WP_306347239.1 Tfp pilus assembly protein FimT/FimU -
  U9966_RS01945 corA 417055..418011 (-) 957 WP_211599135.1 magnesium/cobalt transporter CorA -
  U9966_RS01950 - 418542..419555 (-) 1014 WP_306347240.1 virulence RhuM family protein -
  U9966_RS01955 rhuM 419583..420308 (-) 726 Protein_367 RhuM family protein -
  U9966_RS10210 - 420426..420533 (-) 108 WP_407675188.1 hypothetical protein -
  U9966_RS01960 - 420536..420718 (-) 183 WP_306347241.1 hypothetical protein -
  U9966_RS01965 dprA 420886..422010 (-) 1125 WP_306347242.1 DNA-processing protein DprA Machinery gene
  U9966_RS01970 def 422105..422617 (+) 513 WP_306347243.1 peptide deformylase -
  U9966_RS01975 rfaD 422628..423554 (+) 927 WP_306347244.1 ADP-glyceromanno-heptose 6-epimerase -
  U9966_RS01980 tusB 423671..423943 (-) 273 WP_306347245.1 sulfurtransferase complex subunit TusB -
  U9966_RS01985 tusC 423952..424323 (-) 372 WP_306347246.1 sulfurtransferase complex subunit TusC -
  U9966_RS01990 tusD 424325..424705 (-) 381 WP_306347247.1 sulfurtransferase complex subunit TusD -
  U9966_RS01995 - 424705..425361 (-) 657 WP_211597811.1 transcriptional regulator -
  U9966_RS02000 fkpA 425414..426154 (-) 741 WP_306347248.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  U9966_RS02005 - 426268..426492 (+) 225 WP_211597813.1 SlyX family protein -
  U9966_RS02010 mioC 426529..426966 (-) 438 WP_211597814.1 FMN-binding protein MioC -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42117.19 Da        Isoelectric Point: 5.3139

>NTDB_id=1162139 U9966_RS01965 WP_306347242.1 420886..422010(-) (dprA) [Pasteurella atlantica isolate PAF6K1]
MNKIEQLLKLIQIPQLGAQRIGRLLNEVNFNEFCDYDKTQLRQIGWNEKQIQRWFHPDRKKIEEVLAWQEDDNNHLLTLF
DEDYPFLLRQISTAPPLLFVKGDQAVLSSPQIAIVGSRDYSHYGEYWAKYFSSELVKNNIVVTSGLAIGIDGFCHQQVVK
EKGKTIAVLGSGLNKTYPARHKKLSEQILEQGGVLVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATIKSGSLITAR
YALEQGREVFAVPNSVQDPYAQGCHQLIKEGALLVDCVEDILNAIERQFQPTTKPVIQNTLFENSKVENLAKNDPNLTAC
QQQILSKLSLEPISADDLAEACEMSIETLLIELLTLELEGIVKQVSGGYVRDKR

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1162139 U9966_RS01965 WP_306347242.1 420886..422010(-) (dprA) [Pasteurella atlantica isolate PAF6K1]
ATGAATAAAATAGAACAATTATTAAAATTAATCCAAATTCCACAACTTGGCGCTCAACGTATTGGGCGATTATTAAATGA
AGTCAATTTCAATGAATTTTGTGATTATGATAAGACACAATTGCGTCAAATAGGTTGGAATGAAAAACAAATTCAGCGTT
GGTTTCATCCTGATAGAAAAAAGATAGAGGAAGTTTTAGCGTGGCAAGAAGATGACAATAATCATCTGCTAACATTATTT
GATGAAGATTATCCTTTTCTGCTTAGACAAATTAGTACAGCTCCACCATTACTTTTTGTAAAAGGCGATCAAGCGGTGCT
TTCCTCACCACAAATTGCCATTGTGGGCAGCCGTGATTATTCCCATTATGGCGAATATTGGGCAAAATATTTTTCATCGG
AATTAGTGAAAAATAATATCGTGGTCACCAGTGGTTTGGCGATTGGTATTGACGGTTTTTGTCATCAGCAAGTCGTGAAA
GAAAAAGGTAAAACCATTGCAGTATTAGGCAGTGGTTTAAATAAAACCTACCCAGCTCGCCATAAAAAACTGTCTGAACA
GATTTTAGAACAGGGCGGAGTATTAGTTTCTGAGTTTTTTCCTAATCAGCCACCGCTAGCTGAAAATTTTCCACGTCGTA
ATCGAATTATTAGTGGTTTATCATTAGGTACATTAGTGGTTGAAGCCACTATTAAAAGCGGATCATTAATTACCGCACGC
TATGCCTTAGAACAAGGGCGAGAAGTGTTTGCTGTTCCAAATTCCGTACAAGATCCTTATGCACAAGGTTGCCATCAGTT
GATCAAAGAAGGAGCATTATTGGTGGATTGTGTCGAAGATATATTAAATGCAATCGAACGACAATTTCAGCCGACCACAA
AACCTGTAATTCAAAACACACTATTTGAAAATTCAAAAGTAGAAAATCTTGCAAAAAATGATCCAAATCTTACCGCTTGC
CAACAACAAATTTTATCAAAACTAAGTCTTGAGCCGATTAGTGCCGATGATTTAGCGGAAGCGTGTGAAATGAGTATTGA
AACTTTGTTGATTGAGCTTTTAACTTTGGAATTAGAGGGTATTGTTAAGCAGGTTTCAGGGGGATATGTGAGAGATAAGC
GGTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-368)

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

69.149

100

0.695
  dprA Haemophilus influenzae Rd KW20

50.852

94.118

0.479
  dprA Vibrio campbellii strain DS40M4

45.652

98.396

0.449
  dprA Vibrio cholerae strain A1552

41.351

98.93

0.409
  dprA Legionella pneumophila strain ERS1305867

38.889

100

0.393
  dprA Acinetobacter baylyi ADP1

42.994

83.957

0.361

Multiple sequence alignment