Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U5A05_RS00930 Genome accession   NZ_OY817088
Coordinates   181690..183183 (+) Length   497 a.a.
NCBI ID   WP_321835258.1    Uniprot ID   -
Organism   Pseudomonas kulmbachensis strain FLM 004-28     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 176690..188183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5A05_RS00895 - 176857..177546 (+) 690 WP_261740430.1 HAD family hydrolase -
  U5A05_RS00900 sutA 177790..178116 (-) 327 WP_261740431.1 transcriptional regulator SutA -
  U5A05_RS00905 - 178598..179935 (-) 1338 WP_261740432.1 ammonium transporter -
  U5A05_RS00910 glnK 179970..180308 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  U5A05_RS00915 - 180725..180982 (+) 258 WP_321835256.1 accessory factor UbiK family protein -
  U5A05_RS00920 - 181026..181454 (+) 429 WP_261740434.1 VOC family protein -
  U5A05_RS00925 - 181458..181583 (-) 126 Protein_185 addiction module antidote protein, HigA family -
  U5A05_RS00930 comM 181690..183183 (+) 1494 WP_321835258.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U5A05_RS00935 - 183194..184114 (-) 921 WP_261740436.1 LysR substrate-binding domain-containing protein -
  U5A05_RS00940 - 184267..185667 (+) 1401 WP_261742527.1 NorM family multidrug efflux MATE transporter -
  U5A05_RS00945 - 185855..187522 (-) 1668 WP_321835259.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52879.37 Da        Isoelectric Point: 8.1466

>NTDB_id=1162010 U5A05_RS00930 WP_321835258.1 181690..183183(+) (comM) [Pseudomonas kulmbachensis strain FLM 004-28]
MALAIVYSRAQVGVEAPVVTVEAHLANGLPALTLVGLPETAVKESKERVRSAILNCALDFPARRITLNLAPADLPKDGGR
FDVAIALGILAASGQIPVAALEQVECLGELALSGAIRSVQGVLPAALAARAAGRTLVVPLANAEEACLAAGLTVIAVEHL
LQVVAHFAGRAVIEPYTASGLLHLSKPYPDLIDVQGQLSAKRALLIAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLTE
QEALEVAAIASVASHMPLSCWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARARDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTSLNPSLAS
GETTAKAAVLVAAARERQLQRQGCANAFLDLPGVRSQCTLSDVDNAWLEKACERMTLSLRAAHRLLKVARTLADLEQTPN
IERKHLAEALQYRPVSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1162010 U5A05_RS00930 WP_321835258.1 181690..183183(+) (comM) [Pseudomonas kulmbachensis strain FLM 004-28]
ATGGCTCTGGCTATCGTTTACAGCCGCGCCCAGGTGGGTGTGGAGGCGCCTGTCGTTACGGTCGAGGCGCATCTGGCCAA
TGGTTTACCGGCGTTGACGCTGGTCGGCTTGCCCGAAACGGCGGTCAAGGAAAGTAAAGAGCGGGTACGCAGTGCGATTC
TCAATTGCGCACTGGATTTTCCCGCTCGGCGTATCACTCTCAATCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGACGC
TTTGATGTGGCCATTGCCTTGGGTATTTTGGCAGCCAGCGGGCAAATACCGGTGGCTGCTCTGGAACAGGTCGAGTGTCT
GGGCGAGCTGGCGTTGTCCGGGGCAATCCGGTCAGTTCAGGGCGTGTTACCTGCCGCGTTGGCGGCACGTGCGGCAGGCC
GTACCCTGGTAGTGCCGCTGGCCAATGCCGAAGAGGCATGCCTGGCCGCCGGGTTGACGGTGATCGCAGTCGAACACTTG
TTGCAGGTAGTGGCGCATTTCGCTGGTCGCGCGGTGATTGAGCCTTACACCGCCAGCGGTTTGCTGCACCTGAGCAAACC
CTATCCTGATCTGATCGATGTACAGGGGCAGCTTTCAGCCAAGCGGGCATTATTGATCGCGGCTGCAGGCAGCCATAATT
TACTGTTTACCGGTCCGCCCGGCACTGGCAAAACCCTGTTGGCCAGCCGTCTGCCCGGCTTGTTGCCGCCACTCACCGAG
CAAGAGGCGCTGGAAGTCGCGGCCATTGCGTCGGTGGCCAGCCATATGCCTTTGAGCTGCTGGCCGCAGCGTCCGTTTCG
TCAGCCGCACCATTCGGCCTCCGGCCCGGCTCTGGTGGGCGGCGGTTCAAAACCACAGCCGGGGGAGATTACGCTGGCGC
ATCACGGGGTGTTGTTTCTGGATGAACTCCCCGAGTTCGATCGTAAGGTACTGGAAGTCTTGAGGGAGCCTATGGAGTCC
GGCTTTATCGTAATTGCCAGGGCCCGGGATCGAATGCGTTTTCCGGCGCGCTTCCAGCTGGTTGCGGCGATGAACCCCTG
CCCCTGTGGCTATCTTGGGGAGCCCACGGGCCGATGTCGTTGTACCCCGGAACAGATCCAGCGCTATCGCAACAAGCTCT
CGGGGCCGTTGCTCGATCGCATCGATTTGCATCTGACCGTGGCCCGTGAAACCACATCGCTCAACCCGTCGCTTGCCTCG
GGCGAGACCACAGCCAAGGCTGCGGTGTTAGTGGCAGCAGCGCGTGAGCGTCAGTTGCAGCGTCAGGGCTGTGCCAATGC
CTTTCTCGATCTGCCGGGTGTGCGCAGCCAGTGCACGTTGAGTGATGTGGATAACGCCTGGCTGGAGAAGGCCTGCGAGC
GAATGACCCTGTCACTGCGCGCCGCACATCGGTTGTTGAAAGTGGCGCGGACATTGGCTGATCTTGAGCAAACGCCAAAC
ATAGAACGCAAGCATCTGGCGGAGGCATTGCAGTATCGGCCTGTCAGCGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.758

99.598

0.555
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

54.4

100

0.547
  comM Glaesserella parasuis strain SC1401

53.493

100

0.539
  comM Legionella pneumophila str. Paris

47.782

99.799

0.477
  comM Legionella pneumophila strain ERS1305867

47.782

99.799

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459

Multiple sequence alignment