Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U9J37_RS11595 Genome accession   NZ_OY808997
Coordinates   2534337..2535860 (+) Length   507 a.a.
NCBI ID   WP_005472480.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2529337..2540860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS11580 (VDT1_2362) ilvE 2530965..2531912 (-) 948 WP_005472570.1 branched-chain-amino-acid transaminase -
  U9J37_RS11585 (VDT1_2363) ilvM 2531925..2532209 (-) 285 WP_005472540.1 acetolactate synthase 2 small subunit -
  U9J37_RS11590 (VDT1_2364) ilvG 2532211..2533857 (-) 1647 WP_005472582.1 acetolactate synthase 2 catalytic subunit -
  U9J37_RS11595 (VDT1_2365) comM 2534337..2535860 (+) 1524 WP_005472480.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U9J37_RS11600 (VDT1_2366) - 2535913..2536893 (-) 981 WP_005472462.1 DUF2860 domain-containing protein -
  U9J37_RS11605 (VDT1_2367) - 2537063..2537950 (+) 888 WP_005472613.1 acyltransferase -
  U9J37_RS11610 (VDT1_2368) - 2537984..2538586 (-) 603 WP_043886978.1 thiol:disulfide interchange protein DsbA/DsbL -
  U9J37_RS11615 (VDT1_2369) - 2538619..2539605 (-) 987 WP_005472580.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55366.44 Da        Isoelectric Point: 7.8339

>NTDB_id=1161988 U9J37_RS11595 WP_005472480.1 2534337..2535860(+) (comM) [Vibrio sp. 16 isolate VDT1]
MGLAIIHSRASVGVEAPSVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPLTHLADKEFIGELALSGELRRVKGVLPAALAVNQAQRCLVVPQSNGDQAALVGEKQHKSASTL
LEVCAALCGQNELQLHQSPHKMSSPALERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTD
EEAMETASVASLTQQEINAYNWKQRPFRSPHHSSSTAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQVILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GETTQVVKQRVIEARERMLSRSNKVNALLGSREIERYCPLRKEDAQFLESALHRLGLSIRAYHRIIKVARTIADLEGAEH
IERNHLAEALGYRSMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1161988 U9J37_RS11595 WP_005472480.1 2534337..2535860(+) (comM) [Vibrio sp. 16 isolate VDT1]
ATGGGGTTAGCCATCATCCATAGCCGAGCGTCTGTGGGAGTTGAAGCGCCCAGCGTCACAGTTGAAGTACACATCAGTAA
TGGAATGCCAGGGTTTACCTTGGTTGGTCTACCGGAAACAACCGTCAAAGAATCCCGCGATCGGGTGCGTAGCGCGATTA
TTAACTCTCGTTTTGAGTTTCCAGCCAAGCGGATTACGGTCAATTTAGCCCCAGCAGATTTACCTAAAGAGGGAGGCCGC
TTTGATCTGCCGATCGCGCTGGGCATCCTTGCCGCTTCAGAGCAGATCCCGTTAACCCATTTGGCCGACAAGGAGTTTAT
TGGTGAATTGGCGTTATCGGGAGAGTTGCGGCGCGTAAAAGGTGTGTTACCTGCGGCATTGGCGGTGAATCAAGCACAAC
GTTGTTTGGTGGTTCCGCAGAGCAATGGCGACCAAGCGGCGTTAGTTGGAGAAAAACAACATAAGTCAGCCAGCACTTTA
CTGGAGGTCTGCGCGGCGTTGTGTGGCCAAAATGAACTGCAGCTCCACCAATCTCCACACAAGATGTCGTCACCCGCGCT
AGAGCGTGACTTGCAAGATATTATTGGTCAGCAACAAGGGAAGCGTGCACTAGAGATCGCTGCTGCAGGCAATCACAACC
TCTTATTTCTTGGTCCGCCGGGGACAGGGAAAACCATGCTTGCCTCTCGCCTTTGTGATTTGTTGCCTGAAATGACCGAT
GAAGAGGCGATGGAAACGGCCTCCGTTGCCTCTCTAACGCAACAAGAAATCAACGCCTACAACTGGAAACAGCGTCCATT
TCGCTCGCCGCACCACTCTAGCTCGACCGCAGCATTGGTGGGCGGTGGGTCAGTACCGAGACCCGGAGAGATCTCTTTGG
CGCACAATGGTTTGCTGTTTCTTGATGAAATGCCCGAGTTTGAGCGGAAAGTGTTGGATTCTTTGCGTGAGCCTTTGGAA
TCAGGGGAAATTATTATTTCTCGTGCTCAAGGGAAAACGCGTTTTCCTGCTCGCTTTCAATTGGTCGGCGCACTCAACCC
AAGTCCGACAGGTTACTATGAAGGCAATCAGTCTCGAGTGAACCCTCAAGTGATTTTGCGTTATTTAAGTCGCCTATCTG
GGCCGTTATTAGACCGGTTTGATATGTCGCTAGAGATTCCCGCTTTGCCCAAAGGAACCTTGGCGGAAGGAGGAGATCGC
GGTGAAACAACTCAAGTGGTGAAGCAGCGAGTCATTGAGGCGCGCGAGAGAATGTTGAGTCGATCAAACAAAGTGAATGC
TTTGCTAGGCAGTCGTGAAATTGAGCGATATTGCCCGCTACGTAAAGAAGATGCCCAGTTTCTGGAAAGCGCGTTACACC
GATTGGGATTGTCTATTCGTGCTTATCATCGAATTATCAAGGTGGCACGCACCATTGCTGATTTGGAGGGGGCAGAGCAC
ATTGAACGTAATCATTTGGCGGAAGCGTTAGGTTATCGTTCGATGGATAGGCTGCTCAAACAGTTAACGGCTCAAGCTGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

85.404

100

0.854
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

64.892

100

0.649
  comM Glaesserella parasuis strain SC1401

63.725

100

0.641
  comM Legionella pneumophila str. Paris

50

97.83

0.489
  comM Legionella pneumophila strain ERS1305867

50

97.83

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.43

Multiple sequence alignment