Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | U9J37_RS10190 | Genome accession | NZ_OY808997 |
| Coordinates | 2234661..2235251 (-) | Length | 196 a.a. |
| NCBI ID | WP_005474200.1 | Uniprot ID | - |
| Organism | Vibrio sp. 16 isolate VDT1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2229661..2240251
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U9J37_RS10170 (VDT1_2076) | aroB | 2230628..2231716 (-) | 1089 | WP_005474138.1 | 3-dehydroquinate synthase | - |
| U9J37_RS10175 (VDT1_2077) | aroK | 2231742..2232260 (-) | 519 | WP_005474150.1 | shikimate kinase AroK | - |
| U9J37_RS10180 (VDT1_2078) | pilQ | 2232437..2234098 (-) | 1662 | WP_005474140.1 | type IV pilus secretin PilQ | Machinery gene |
| U9J37_RS10185 (VDT1_2079) | pilP | 2234159..2234671 (-) | 513 | WP_005474229.1 | pilus assembly protein PilP | Machinery gene |
| U9J37_RS10190 (VDT1_2080) | pilO | 2234661..2235251 (-) | 591 | WP_005474200.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| U9J37_RS10195 (VDT1_2081) | pilN | 2235244..2235831 (-) | 588 | WP_005474158.1 | PilN domain-containing protein | Machinery gene |
| U9J37_RS10200 (VDT1_2082) | pilM | 2235821..2236816 (-) | 996 | WP_005474188.1 | type IV pilus assembly protein PilM | Machinery gene |
| U9J37_RS10205 (VDT1_2083) | - | 2236955..2239498 (+) | 2544 | WP_043887187.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22835.95 Da Isoelectric Point: 4.5240
>NTDB_id=1161981 U9J37_RS10190 WP_005474200.1 2234661..2235251(-) (pilO) [Vibrio sp. 16 isolate VDT1]
MASYNELDIEELAEWPLLPQLVVILLIAGLIQAAGYWFYLQPQMEQIEQLRQQEVTLKSTATIKANKVATLPKLQAQLDE
LSERYDYLSRQLPVQKELASMLASVNEEGLKNSLTFTRIDWGQKQNQEFLYRLPLNIELTGHYHSIGDFSQAIAELPRII
NFDDIDWQRVSQESSTLHFRVRAYTYQFKPEVEDEK
MASYNELDIEELAEWPLLPQLVVILLIAGLIQAAGYWFYLQPQMEQIEQLRQQEVTLKSTATIKANKVATLPKLQAQLDE
LSERYDYLSRQLPVQKELASMLASVNEEGLKNSLTFTRIDWGQKQNQEFLYRLPLNIELTGHYHSIGDFSQAIAELPRII
NFDDIDWQRVSQESSTLHFRVRAYTYQFKPEVEDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=1161981 U9J37_RS10190 WP_005474200.1 2234661..2235251(-) (pilO) [Vibrio sp. 16 isolate VDT1]
ATGGCTAGTTACAACGAATTAGACATAGAAGAGTTGGCAGAATGGCCCTTGCTCCCTCAACTGGTTGTCATACTCCTAAT
CGCGGGTTTGATTCAGGCTGCAGGCTATTGGTTTTATCTGCAACCGCAAATGGAGCAGATCGAACAACTTCGCCAACAAG
AGGTGACCTTAAAATCCACGGCGACCATCAAAGCGAATAAAGTCGCTACTCTGCCCAAGCTCCAAGCTCAGTTAGATGAG
CTGTCGGAGCGTTACGATTATCTATCACGTCAGTTGCCAGTCCAAAAAGAACTCGCTTCCATGTTGGCATCGGTTAACGA
AGAAGGGTTAAAAAATTCGCTCACATTTACGCGAATTGATTGGGGGCAAAAACAGAATCAAGAGTTCCTTTATCGCTTGC
CTCTCAACATAGAACTTACTGGCCACTACCACAGCATCGGAGACTTCAGTCAAGCGATCGCCGAGCTTCCGCGCATCATC
AATTTTGACGATATTGATTGGCAGCGCGTTAGTCAGGAGAGCAGCACGCTGCATTTTCGCGTTCGAGCTTACACCTATCA
ATTTAAGCCGGAGGTAGAAGATGAAAAATAA
ATGGCTAGTTACAACGAATTAGACATAGAAGAGTTGGCAGAATGGCCCTTGCTCCCTCAACTGGTTGTCATACTCCTAAT
CGCGGGTTTGATTCAGGCTGCAGGCTATTGGTTTTATCTGCAACCGCAAATGGAGCAGATCGAACAACTTCGCCAACAAG
AGGTGACCTTAAAATCCACGGCGACCATCAAAGCGAATAAAGTCGCTACTCTGCCCAAGCTCCAAGCTCAGTTAGATGAG
CTGTCGGAGCGTTACGATTATCTATCACGTCAGTTGCCAGTCCAAAAAGAACTCGCTTCCATGTTGGCATCGGTTAACGA
AGAAGGGTTAAAAAATTCGCTCACATTTACGCGAATTGATTGGGGGCAAAAACAGAATCAAGAGTTCCTTTATCGCTTGC
CTCTCAACATAGAACTTACTGGCCACTACCACAGCATCGGAGACTTCAGTCAAGCGATCGCCGAGCTTCCGCGCATCATC
AATTTTGACGATATTGATTGGCAGCGCGTTAGTCAGGAGAGCAGCACGCTGCATTTTCGCGTTCGAGCTTACACCTATCA
ATTTAAGCCGGAGGTAGAAGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
77.551 |
100 |
0.776 |
| pilO | Vibrio campbellii strain DS40M4 |
66.842 |
96.939 |
0.648 |