Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | U9J37_RS09570 | Genome accession | NZ_OY808997 |
| Coordinates | 2117111..2117644 (-) | Length | 177 a.a. |
| NCBI ID | WP_038140437.1 | Uniprot ID | A0A0A5JJ92 |
| Organism | Vibrio sp. 16 isolate VDT1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2112111..2122644
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U9J37_RS09550 (VDT1_1945) | - | 2112541..2112864 (-) | 324 | WP_043887017.1 | hypothetical protein | - |
| U9J37_RS09555 (VDT1_1946) | gspM | 2112857..2113507 (-) | 651 | WP_005472780.1 | type II secretion system protein GspM | - |
| U9J37_RS09560 (VDT1_1947) | - | 2113504..2114943 (-) | 1440 | WP_043887018.1 | MSHA biogenesis protein MshI | - |
| U9J37_RS09565 (VDT1_1948) | csrD | 2114957..2116954 (-) | 1998 | WP_038140435.1 | RNase E specificity factor CsrD | - |
| U9J37_RS09570 (VDT1_1949) | ssb | 2117111..2117644 (-) | 534 | WP_038140437.1 | single-stranded DNA-binding protein | Machinery gene |
| U9J37_RS09575 (VDT1_1950) | qstR | 2117920..2118567 (+) | 648 | WP_043887020.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| U9J37_RS09580 (VDT1_1951) | galU | 2118684..2119559 (+) | 876 | WP_005472668.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| U9J37_RS09585 (VDT1_1952) | uvrA | 2119691..2122513 (+) | 2823 | WP_005472685.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19583.60 Da Isoelectric Point: 4.9269
>NTDB_id=1161977 U9J37_RS09570 WP_038140437.1 2117111..2117644(-) (ssb) [Vibrio sp. 16 isolate VDT1]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGYNGVMQMLGGRAQGGAPGQGMGQPQQQGWGQPQQPAAQQSQPQQQYSQPQQQQA
QPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGYNGVMQMLGGRAQGGAPGQGMGQPQQQGWGQPQQPAAQQSQPQQQYSQPQQQQA
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=1161977 U9J37_RS09570 WP_038140437.1 2117111..2117644(-) (ssb) [Vibrio sp. 16 isolate VDT1]
ATGGCCAGCCGTGGAGTAAACAAAGTTATTTTAGTCGGTAATCTGGGTTCAGATCCGGAAGTTCGTTACATGCCAAGTGG
TGGTGCTGTCGCTAATATCACCATCGCAACGTCTGAAACATGGCGAGATAAAGCGACAGGCGAGCAGCGTGAAAAAACAG
AGTGGCACCGTGTGGCACTGTTTGGCAAGCTTGCGGAAGTGGCTGGTGAGTACCTACGTAAAGGCTCACAAGTGTATGTT
GAAGGTCAATTGCAGACGCGCAAGTGGCAAGATCAAAGCGGTCAAGACCGTTACACTACCGAGGTCGTAGTACAAGGCTA
CAATGGCGTTATGCAAATGCTAGGTGGCCGTGCTCAAGGCGGTGCTCCAGGCCAAGGCATGGGTCAACCTCAACAGCAAG
GTTGGGGACAGCCGCAGCAACCTGCAGCTCAGCAGAGTCAACCGCAACAGCAATACTCTCAGCCACAACAGCAGCAAGCT
CAGCCTCAATACAATGAGCCGCCGATGGATTTTGACGACGACATCCCATTCTAA
ATGGCCAGCCGTGGAGTAAACAAAGTTATTTTAGTCGGTAATCTGGGTTCAGATCCGGAAGTTCGTTACATGCCAAGTGG
TGGTGCTGTCGCTAATATCACCATCGCAACGTCTGAAACATGGCGAGATAAAGCGACAGGCGAGCAGCGTGAAAAAACAG
AGTGGCACCGTGTGGCACTGTTTGGCAAGCTTGCGGAAGTGGCTGGTGAGTACCTACGTAAAGGCTCACAAGTGTATGTT
GAAGGTCAATTGCAGACGCGCAAGTGGCAAGATCAAAGCGGTCAAGACCGTTACACTACCGAGGTCGTAGTACAAGGCTA
CAATGGCGTTATGCAAATGCTAGGTGGCCGTGCTCAAGGCGGTGCTCCAGGCCAAGGCATGGGTCAACCTCAACAGCAAG
GTTGGGGACAGCCGCAGCAACCTGCAGCTCAGCAGAGTCAACCGCAACAGCAATACTCTCAGCCACAACAGCAGCAAGCT
CAGCCTCAATACAATGAGCCGCCGATGGATTTTGACGACGACATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
86.111 |
100 |
0.876 |
| ssb | Glaesserella parasuis strain SC1401 |
55.914 |
100 |
0.588 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.492 |
| ssb | Neisseria meningitidis MC58 |
46.154 |
100 |
0.475 |