Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   U9J37_RS09575 Genome accession   NZ_OY808997
Coordinates   2117920..2118567 (+) Length   215 a.a.
NCBI ID   WP_043887020.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2112920..2123567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS09560 (VDT1_1947) - 2113504..2114943 (-) 1440 WP_043887018.1 MSHA biogenesis protein MshI -
  U9J37_RS09565 (VDT1_1948) csrD 2114957..2116954 (-) 1998 WP_038140435.1 RNase E specificity factor CsrD -
  U9J37_RS09570 (VDT1_1949) ssb 2117111..2117644 (-) 534 WP_038140437.1 single-stranded DNA-binding protein Machinery gene
  U9J37_RS09575 (VDT1_1950) qstR 2117920..2118567 (+) 648 WP_043887020.1 LuxR C-terminal-related transcriptional regulator Regulator
  U9J37_RS09580 (VDT1_1951) galU 2118684..2119559 (+) 876 WP_005472668.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  U9J37_RS09585 (VDT1_1952) uvrA 2119691..2122513 (+) 2823 WP_005472685.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24946.89 Da        Isoelectric Point: 8.1738

>NTDB_id=1161978 U9J37_RS09575 WP_043887020.1 2117920..2118567(+) (qstR) [Vibrio sp. 16 isolate VDT1]
MMKNSYMRTIHFLCEDKKVTHPIVQKIEQALEINIPYIEPQDLMLALQTSKHRILMIDHHDYSRLNNQIRDLPLANKTFE
NIVINVQCRLTTDEILNFGHLKGLFYETDSVEVISKGCSEIINGQNWLPRKVAAQLLFHYRNMVETQSAPVTVDLTTREI
HILRSLMTGASNSQIAEDQFISEFTVKSHLYQIFKKLCVKNRVQAAAWARQHLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1161978 U9J37_RS09575 WP_043887020.1 2117920..2118567(+) (qstR) [Vibrio sp. 16 isolate VDT1]
ATTATGAAGAATAGTTATATGCGTACCATTCATTTCTTGTGTGAAGATAAGAAGGTTACTCATCCGATAGTTCAAAAGAT
AGAACAAGCGTTAGAGATCAATATCCCCTATATCGAACCGCAAGATCTTATGCTCGCGCTCCAAACGAGCAAACATCGCA
TTTTGATGATCGACCACCATGACTACTCTCGCCTGAATAATCAGATACGCGATCTTCCACTGGCGAACAAAACCTTTGAA
AACATCGTCATTAATGTTCAATGTCGCTTAACCACAGATGAAATCCTCAATTTTGGTCATCTAAAGGGGTTGTTTTATGA
AACCGACTCCGTAGAAGTCATCAGTAAAGGCTGTAGCGAAATTATCAACGGACAGAACTGGTTACCTCGCAAGGTCGCCG
CACAACTGTTATTTCACTATCGCAACATGGTAGAAACTCAGTCAGCACCAGTTACCGTTGATCTCACCACTCGCGAAATC
CACATCTTAAGAAGTTTAATGACAGGTGCTTCCAATAGCCAAATAGCAGAAGACCAATTTATCAGTGAGTTCACCGTTAA
ATCCCATCTCTATCAGATATTCAAAAAGTTGTGCGTAAAAAATCGAGTACAAGCTGCCGCTTGGGCAAGGCAACACCTGT
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.521
  qstR Vibrio cholerae strain A1552

52.336

99.535

0.521

Multiple sequence alignment