Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKU41_RS05480 Genome accession   NZ_OY787459
Coordinates   1187961..1188383 (-) Length   140 a.a.
NCBI ID   WP_321404545.1    Uniprot ID   -
Organism   MAG: Maridesulfovibrio sp. isolate dd810cdf-0f79-41bc-9a6a-58a6cc26fc8d     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1162933..1196828 1187961..1188383 within 0


Gene organization within MGE regions


Location: 1162933..1196828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKU41_RS05250 (U3A25_RS05235) - 1162933..1163598 (+) 666 WP_321404487.1 phage antirepressor N-terminal domain-containing protein -
  ACKU41_RS05255 (U3A25_RS05240) - 1163610..1163786 (+) 177 WP_321404488.1 hypothetical protein -
  ACKU41_RS05260 (U3A25_RS05245) - 1163880..1164206 (+) 327 WP_321404490.1 hypothetical protein -
  ACKU41_RS05265 (U3A25_RS05250) - 1164221..1165336 (-) 1116 WP_321404491.1 hypothetical protein -
  ACKU41_RS05270 (U3A25_RS05255) - 1165337..1166827 (-) 1491 WP_321404493.1 hypothetical protein -
  ACKU41_RS05275 (U3A25_RS05260) - 1166889..1167227 (+) 339 WP_321404495.1 hypothetical protein -
  ACKU41_RS05280 (U3A25_RS05265) - 1167224..1168243 (-) 1020 WP_321404496.1 hypothetical protein -
  ACKU41_RS05285 (U3A25_RS05270) - 1168244..1168861 (-) 618 WP_321404498.1 hypothetical protein -
  ACKU41_RS05290 (U3A25_RS05275) - 1168863..1169177 (-) 315 WP_321404499.1 hypothetical protein -
  ACKU41_RS05295 (U3A25_RS05280) - 1169232..1170194 (-) 963 WP_321404501.1 DUF5309 family protein -
  ACKU41_RS05300 (U3A25_RS05285) - 1170243..1171283 (-) 1041 WP_321404503.1 hypothetical protein -
  ACKU41_RS05305 (U3A25_RS05290) - 1171297..1171569 (-) 273 WP_321404505.1 hypothetical protein -
  ACKU41_RS05310 (U3A25_RS05295) - 1171675..1173753 (-) 2079 WP_321404506.1 hypothetical protein -
  ACKU41_RS05315 (U3A25_RS05300) - 1173753..1175141 (-) 1389 WP_321404508.1 hypothetical protein -
  ACKU41_RS05355 (U3A25_RS05340) - 1175782..1176138 (-) 357 WP_321404509.1 hypothetical protein -
  ACKU41_RS05360 (U3A25_RS05345) - 1176135..1176410 (-) 276 WP_321404510.1 hypothetical protein -
  ACKU41_RS05365 (U3A25_RS05350) - 1176755..1177084 (-) 330 WP_321404511.1 hypothetical protein -
  ACKU41_RS05370 (U3A25_RS05355) - 1177387..1177854 (-) 468 WP_321404513.1 terminase small subunit -
  ACKU41_RS05375 (U3A25_RS05360) - 1177838..1178377 (-) 540 WP_321404514.1 helix-turn-helix domain-containing protein -
  ACKU41_RS05380 (U3A25_RS05365) - 1178442..1178654 (-) 213 WP_321404516.1 hypothetical protein -
  ACKU41_RS05385 (U3A25_RS05370) - 1178663..1178905 (-) 243 WP_321404517.1 hypothetical protein -
  ACKU41_RS05390 (U3A25_RS05375) - 1178905..1179351 (-) 447 WP_321404519.1 hypothetical protein -
  ACKU41_RS05395 (U3A25_RS05380) - 1179351..1179533 (-) 183 WP_321404520.1 hypothetical protein -
  ACKU41_RS05400 (U3A25_RS05385) - 1179552..1179677 (-) 126 WP_321404522.1 hypothetical protein -
  ACKU41_RS05405 (U3A25_RS05390) - 1179661..1179804 (-) 144 WP_321404523.1 hypothetical protein -
  ACKU41_RS05410 (U3A25_RS05395) - 1180179..1180589 (-) 411 WP_321404524.1 DUF5675 family protein -
  ACKU41_RS05415 (U3A25_RS05400) - 1180582..1181097 (-) 516 WP_321404525.1 hypothetical protein -
  ACKU41_RS05420 (U3A25_RS05405) - 1181090..1181248 (-) 159 WP_321404527.1 hypothetical protein -
  ACKU41_RS05425 (U3A25_RS05410) - 1181466..1181765 (-) 300 WP_321404529.1 hypothetical protein -
  ACKU41_RS05430 (U3A25_RS05415) - 1181784..1182674 (-) 891 WP_321404531.1 phosphoadenosine phosphosulfate reductase family protein -
  ACKU41_RS05435 (U3A25_RS05420) - 1182671..1182817 (-) 147 WP_321404532.1 hypothetical protein -
  ACKU41_RS05440 (U3A25_RS05425) - 1182817..1183032 (-) 216 WP_321404534.1 hypothetical protein -
  ACKU41_RS05445 (U3A25_RS05430) - 1183156..1183500 (-) 345 WP_321404536.1 hypothetical protein -
  ACKU41_RS05450 (U3A25_RS05435) - 1183620..1184384 (-) 765 WP_321404537.1 helix-turn-helix domain-containing protein -
  ACKU41_RS05455 (U3A25_RS05440) - 1184368..1185660 (-) 1293 WP_321404538.1 replicative DNA helicase -
  ACKU41_RS05460 (U3A25_RS05445) - 1185644..1186114 (-) 471 WP_321404540.1 hypothetical protein -
  ACKU41_RS05465 (U3A25_RS05450) - 1186114..1186278 (-) 165 WP_321404541.1 hypothetical protein -
  ACKU41_RS05470 (U3A25_RS05455) - 1186323..1186721 (-) 399 WP_321404543.1 hypothetical protein -
  ACKU41_RS05475 (U3A25_RS05460) - 1186739..1187947 (-) 1209 WP_321404544.1 AAA family ATPase -
  ACKU41_RS05480 (U3A25_RS05465) ssb 1187961..1188383 (-) 423 WP_321404545.1 single-stranded DNA-binding protein Machinery gene
  ACKU41_RS05485 (U3A25_RS05470) - 1188383..1188961 (-) 579 WP_321404546.1 3'-5' exonuclease -
  ACKU41_RS05490 (U3A25_RS05475) - 1188961..1189614 (-) 654 WP_321404547.1 ribonuclease H-like domain-containing protein -
  ACKU41_RS05495 (U3A25_RS05480) - 1189615..1190418 (-) 804 WP_321404549.1 ERF family protein -
  ACKU41_RS05500 (U3A25_RS05485) - 1190788..1191438 (+) 651 WP_321404551.1 XRE family transcriptional regulator -
  ACKU41_RS05505 (U3A25_RS05490) - 1191951..1192265 (+) 315 WP_321404553.1 hypothetical protein -
  ACKU41_RS05510 (U3A25_RS05495) - 1192348..1193466 (+) 1119 WP_321404554.1 hypothetical protein -
  ACKU41_RS05515 (U3A25_RS05500) - 1193467..1193649 (+) 183 WP_321404556.1 hypothetical protein -
  ACKU41_RS05520 (U3A25_RS05505) - 1193636..1194340 (+) 705 WP_321404557.1 hypothetical protein -
  ACKU41_RS05525 (U3A25_RS05510) - 1194337..1194465 (+) 129 WP_321404558.1 Com family DNA-binding transcriptional regulator -
  ACKU41_RS05530 (U3A25_RS05515) - 1194455..1194850 (+) 396 WP_321404559.1 BC1872 family protein -
  ACKU41_RS05535 (U3A25_RS05520) - 1195199..1195675 (+) 477 WP_321404561.1 ImmA/IrrE family metallo-endopeptidase -
  ACKU41_RS05540 (U3A25_RS05525) - 1195776..1196828 (+) 1053 WP_321404563.1 site-specific integrase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15617.01 Da        Isoelectric Point: 5.8530

>NTDB_id=1161955 ACKU41_RS05480 WP_321404545.1 1187961..1188383(-) (ssb) [MAG: Maridesulfovibrio sp. isolate dd810cdf-0f79-41bc-9a6a-58a6cc26fc8d]
MAGSMNKVILIGRLGQDPQLNYTQSGQAVCSLSVATDEGYKDKNTGQKVDKTEWHRVVAWRQTAEFAGQYLSKGRLVMVE
GKLETRKWQDQNGQDRYTTEINASNIQALDSQQDGGGQQGNSGYDQQGYQQQGQYNGNYN

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1161955 ACKU41_RS05480 WP_321404545.1 1187961..1188383(-) (ssb) [MAG: Maridesulfovibrio sp. isolate dd810cdf-0f79-41bc-9a6a-58a6cc26fc8d]
ATGGCTGGAAGCATGAACAAGGTAATCCTGATCGGCAGATTGGGGCAGGACCCGCAGCTTAATTACACTCAGTCCGGGCA
AGCGGTGTGCAGTCTAAGTGTTGCCACTGACGAAGGCTACAAAGATAAGAACACCGGGCAGAAGGTTGACAAGACTGAAT
GGCACCGGGTTGTAGCTTGGAGACAGACAGCAGAGTTTGCAGGCCAGTACCTGAGTAAAGGCCGCTTGGTTATGGTTGAG
GGTAAGCTTGAGACCCGCAAATGGCAGGATCAGAACGGGCAGGACCGTTACACCACCGAAATAAACGCCTCCAACATTCA
GGCTTTGGACAGCCAGCAGGACGGAGGAGGCCAGCAGGGTAACAGTGGCTATGATCAGCAGGGCTACCAGCAGCAAGGCC
AGTACAATGGAAACTATAATTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.25

100

0.579
  ssb Neisseria gonorrhoeae MS11

46.269

95.714

0.443
  ssb Neisseria meningitidis MC58

46.269

95.714

0.443
  ssb Vibrio cholerae strain A1552

52.586

82.857

0.436
  ssb Latilactobacillus sakei subsp. sakei 23K

37.5

97.143

0.364

Multiple sequence alignment