Detailed information NTG1161862

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACKPCU_RS17140
• Genome accession: NZ_OY781932
• Coordinates: 3671465..3672322 (+)
• Length: 285 a.a.
• NCBI ID: WP_321348581.1
• Uniprot ID: -
• Organism: MAG: Halopseudomonas oceani isolate ab883223-6a80-4053-bf73-fb395571e785
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3666465..3677322

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKPCU_RS17125 (U2971_RS17070)	pilA	3667798..3668199 (-)	402	WP_321348573.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
ACKPCU_RS17130 (U2971_RS17075)	pilB	3668498..3670198 (+)	1701	WP_321348577.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACKPCU_RS17135 (U2971_RS17080)	pilC	3670202..3671461 (+)	1260	WP_321348579.1	type II secretion system F family protein	Machinery gene
ACKPCU_RS17140 (U2971_RS17085)	pilD	3671465..3672322 (+)	858	WP_321348581.1	A24 family peptidase	Machinery gene
ACKPCU_RS17145 (U2971_RS17090)	coaE	3672358..3672960 (+)	603	WP_321348583.1	dephospho-CoA kinase	-
ACKPCU_RS17150 (U2971_RS17095)	yacG	3672957..3673148 (+)	192	WP_104737400.1	DNA gyrase inhibitor YacG	-
ACKPCU_RS17155 (U2971_RS17100)	-	3673151..3674098 (+)	948	WP_321348587.1	Nudix family hydrolase	-
ACKPCU_RS17160 (U2971_RS17105)	ispH	3674149..3675093 (-)	945	WP_321348589.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
ACKPCU_RS17165 (U2971_RS17110)	fkpB	3675142..3675573 (-)	432	WP_321348591.1	FKBP-type peptidyl-prolyl cis-trans isomerase	-
ACKPCU_RS17170 (U2971_RS17115)	lspA	3675619..3676116 (-)	498	WP_321348593.1	signal peptidase II	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31445.27 Da
• Isoelectric Point: 6.4856

>NTDB_id=1161862 ACKPCU_RS17140 WP_321348581.1 3671465..3672322(+) (pilD) [MAG: Halopseudomonas oceani isolate ab883223-6a80-4053-bf73-fb395571e785]
MPLIDYLASHALAFVLLAGLLGLIVGSFLNVVIHRLPHMMEREWRQQALELLEPDTEHPAAETYNLLLPHSHCPHCKTEI
KAWQNLPIISYLILRGRCGQCRHPISARYPLVEALTAALSMVVAWQYGFNWAAGGMILLTWGLISLSMIDADTQLLPDAL
VLPLLWLGLIANSFGLYTDLNTALWGAIAGYLSLWSVYWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLV
GAILGIIILKTRGADNSTPLPFGPYLAIAGWIALIWGETIPIFSF

Nucleotide

• Length: 858 bp

>NTDB_id=1161862 ACKPCU_RS17140 WP_321348581.1 3671465..3672322(+) (pilD) [MAG: Halopseudomonas oceani isolate ab883223-6a80-4053-bf73-fb395571e785]
ATGCCGCTCATTGACTATCTGGCCAGCCATGCGCTGGCCTTTGTTTTGCTCGCAGGCCTGCTGGGCCTGATTGTCGGCAG
CTTCCTCAACGTCGTCATTCACCGCCTGCCACATATGATGGAGCGGGAATGGCGTCAACAGGCCCTCGAACTACTCGAAC
CCGACACAGAACACCCTGCGGCGGAAACCTATAATCTGCTGTTGCCGCACTCACACTGCCCGCACTGCAAAACCGAGATC
AAGGCCTGGCAAAACCTGCCAATCATCAGCTACCTGATTCTCCGCGGCCGCTGCGGCCAGTGCCGCCATCCGATCAGCGC
CCGCTACCCGCTGGTGGAAGCCTTGACCGCCGCCCTCTCAATGGTGGTTGCGTGGCAGTACGGCTTCAACTGGGCTGCAG
GTGGCATGATCCTGCTGACCTGGGGCTTGATCAGCCTCAGCATGATCGACGCCGACACCCAGCTACTGCCGGATGCACTG
GTACTCCCCTTGCTCTGGCTCGGCCTGATTGCCAATAGCTTTGGGCTCTACACGGATCTCAATACGGCTTTGTGGGGAGC
CATCGCAGGTTATCTGAGTCTCTGGTCAGTTTATTGGGTATTCAAGCTGATTACCGGCAAGGAAGGCATGGGCTATGGCG
ACTTCAAGCTGCTCGCCATGCTGGGCGCCTGGGGCGGCTGGCAAATTTTGCCACTGACGATTCTGCTGTCTTCACTGGTT
GGCGCCATCCTCGGCATTATCATCCTCAAGACACGGGGAGCAGACAACAGCACGCCTCTGCCCTTCGGGCCCTATCTGGC
GATTGCCGGCTGGATAGCACTGATCTGGGGTGAGACAATCCCCATCTTCAGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.478	94.035	0.512
pilD	Acinetobacter baumannii D1279779	52.518	97.544	0.512
pilD	Acinetobacter nosocomialis M2	52.518	97.544	0.512
pilD	Vibrio campbellii strain DS40M4	53.731	94.035	0.505
pilD	Neisseria gonorrhoeae MS11	51.504	93.333	0.481