Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BH81_RS00910 Genome accession   NZ_CP007039
Coordinates   194773..196266 (-) Length   497 a.a.
NCBI ID   WP_025257947.1    Uniprot ID   -
Organism   Pseudomonas cichorii JBC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 189773..201266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH81_RS00895 (PCH70_01840) - 191123..192043 (+) 921 WP_025257944.1 LysR substrate-binding domain-containing protein -
  BH81_RS00900 (PCH70_01850) - 192233..194209 (+) 1977 WP_025257945.1 methyl-accepting chemotaxis protein -
  BH81_RS00905 - 194389..194646 (-) 258 WP_236250093.1 hypothetical protein -
  BH81_RS00910 (PCH70_01890) comM 194773..196266 (-) 1494 WP_025257947.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BH81_RS00915 (PCH70_01900) - 196443..197174 (-) 732 WP_143008712.1 hypothetical protein -
  BH81_RS00920 (PCH70_01910) - 197188..197391 (-) 204 WP_025257949.1 hypothetical protein -
  BH81_RS00925 (PCH70_01920) - 198114..198656 (+) 543 WP_025257950.1 hypothetical protein -
  BH81_RS00930 (PCH70_01930) - 198683..199657 (-) 975 WP_025257951.1 hypothetical protein -
  BH81_RS00935 (PCH70_01950) - 199683..199949 (-) 267 WP_025257952.1 accessory factor UbiK family protein -
  BH81_RS00940 (PCH70_01970) glnK 200371..200709 (+) 339 WP_002555808.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53034.85 Da        Isoelectric Point: 7.5081

>NTDB_id=116185 BH81_RS00910 WP_025257947.1 194773..196266(-) (comM) [Pseudomonas cichorii JBC1]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPTLTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLGASGQLPLLALQDVECLGELALSGAIRPVQGVLPAALAARAAERTLIVPAANAEEACLASGLRVIAVSHL
LELVAHFNGRTPIQPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
YEALEVAAIQSVASQVPLSSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGILFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYMGEPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPAPQT
GDDTASAAALVAKARDRQQRRQGCANAFLDLPGLREHCALSAADETWLETACERLALSLRAAHRLLKVARTLADLEQEDA
IDRRHLAEALQYRPASN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=116185 BH81_RS00910 WP_025257947.1 194773..196266(-) (comM) [Pseudomonas cichorii JBC1]
ATGTCTCTCGCCATCGTCCACAGCCGCGCCCAGGTGGGTGTGGAAGCACCTGCCGTTACTGTCGAAGCCCATCTGGCCAA
CGGCCTGCCGACCCTGACGCTGGTCGGTTTGCCGGAAGGTGCGGTCAAGGAAAGCAAGGATCGGGTGCGTAGCGCCATTC
TCAATTCGGGGCTGGATTTCCCGGCGCGGCGGATCACGCTCAATCTGGCTCCGGCGGATTTGCCGAAGGATGGTGGCCGT
TTTGATCTGGCCATTGCGCTGGGTTTGCTGGGGGCCAGTGGGCAGTTGCCGTTATTGGCGTTACAGGATGTGGAATGTCT
GGGCGAGCTGGCATTGTCGGGGGCGATTCGGCCGGTTCAGGGGGTGTTGCCTGCTGCGCTGGCGGCGCGGGCGGCAGAAC
GTACGCTGATCGTGCCGGCGGCCAATGCCGAAGAAGCATGCCTGGCTTCGGGGTTGCGGGTCATTGCGGTGAGTCATTTG
CTGGAGCTGGTCGCACATTTCAATGGGCGCACGCCTATCCAGCCTTATCAGAGCAGCGGGCTTTTGCATCAGCCCAAGCC
TTACCCGGATTTGAGCGAAGTTCAGGGCCAGACCGCCGCCAAGCGCGCCTTGGTGGTTGCAGCGGCCGGTGCGCATAACC
TGCTTTTCAGCGGCCCGCCGGGCACGGGCAAAACCTTGCTGGCCAGTCGCTTGCCGGGGTTGTTGCCGCCGCTGGATGAG
TACGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTGGCCAGTCAGGTGCCGCTGAGCAGTTGGCCGCAACGACCTTTCCG
TCAACCTCATCACTCTGCTTCGGGGCCGGCATTGGTGGGCGGTGGCAGTCGCCCTCAACCTGGCGAGATAACATTGGCTC
ATCACGGCATTTTATTTTTAGATGAATTACCCGAGTTCGATCGTCGCGTTCTGGAGGTTTTGCGCGAGCCGCTGGAGTCT
GGCCATATCGTGATTTCCCGGGCGCGGGATCGGGTGCGGTTCCCGGCGCGCTTTCAACTGGTCGCAGCCATGAACCCTTG
CCCGTGCGGTTATATGGGTGAGCCCACCGGGCGGTGCCGTTGTTCGACCGAGCAGATCCAGCGTTATCGCAACAAGCTGT
CCGGGCCGTTGCTGGACCGGATCGATCTGCACCTGACTGTCGCTCGCGAAGCCACTGCCCTCAACCCGGCACCGCAAACC
GGCGACGACACCGCCAGCGCCGCCGCGTTGGTCGCAAAAGCCCGTGATCGCCAGCAAAGACGCCAAGGCTGCGCCAATGC
CTTCCTCGATTTGCCGGGGTTGCGTGAGCATTGTGCGTTGTCGGCGGCGGATGAAACCTGGCTGGAAACGGCCTGCGAGC
GATTGGCCCTGTCGTTGCGGGCCGCGCACCGGTTGCTGAAAGTGGCAAGAACCCTGGCGGATCTGGAGCAGGAGGATGCG
ATTGATCGTCGCCATCTGGCCGAAGCGTTGCAGTATCGGCCTGCGAGTAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Glaesserella parasuis strain SC1401

54

100

0.543
  comM Vibrio campbellii strain DS40M4

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

53.4

100

0.537
  comM Legionella pneumophila str. Paris

48.996

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.461

Multiple sequence alignment