Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACKPCU_RS01200 Genome accession   NZ_OY781932
Coordinates   269362..270867 (+) Length   501 a.a.
NCBI ID   WP_321349205.1    Uniprot ID   -
Organism   MAG: Halopseudomonas oceani isolate ab883223-6a80-4053-bf73-fb395571e785     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 264362..275867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPCU_RS01175 (U2971_RS01175) - 264421..266403 (-) 1983 WP_321349201.1 carboxylesterase family protein -
  ACKPCU_RS01180 (U2971_RS01180) - 266819..268069 (-) 1251 WP_104739721.1 ammonium transporter -
  ACKPCU_RS01185 (U2971_RS01185) glnK 268121..268459 (-) 339 WP_088276303.1 P-II family nitrogen regulator -
  ACKPCU_RS01190 (U2971_RS01190) - 268515..268712 (-) 198 WP_146040347.1 hypothetical protein -
  ACKPCU_RS01195 (U2971_RS01195) - 269032..269277 (+) 246 WP_104739722.1 accessory factor UbiK family protein -
  ACKPCU_RS01200 (U2971_RS01200) comM 269362..270867 (+) 1506 WP_321349205.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACKPCU_RS01205 (U2971_RS01205) - 270995..272701 (-) 1707 WP_321349207.1 bifunctional diguanylate cyclase/phosphodiesterase -
  ACKPCU_RS01210 (U2971_RS01210) rep 273004..275010 (+) 2007 WP_321349209.1 DNA helicase Rep -
  ACKPCU_RS01215 (U2971_RS01215) - 275069..275497 (-) 429 WP_321349211.1 c-type cytochrome -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53346.14 Da        Isoelectric Point: 7.7137

>NTDB_id=1161839 ACKPCU_RS01200 WP_321349205.1 269362..270867(+) (comM) [MAG: Halopseudomonas oceani isolate ab883223-6a80-4053-bf73-fb395571e785]
MSLATIHSRARLGIDAPAVQVEVHLANGMPSLTLVGLPETAVRESKDRVRSALLNAQLEFPGSKRITISLAPADLPKDGG
RFDLAIALGLLAASGQIPAQALVDCECIGELALSGELRPIQGVLPVALACRDAGRKLILPAANAAEAALVSGIELIAAEH
LLPLCAHLRGEQSLPDLPPTAPSQPARHADLADVQGQEQAKRALIIAAAGGHNLLLFGPPGTGKTLLASRLPGILPPLQE
HEALEVAAIQSVCDRTPLSAWPTRPFRSPHHGASAAALVGGGSQPRPGEISQAHHGVLFLDELPEFDRKVLEMLREPLES
GAIHIARAREQLRFPARFQLVAAMNPCPCGYQGDPSSRCRCTPEQVQRYRSKLSGPLLDRIDLHLAMRNEPFSLQGNSGP
GTPDSATAAAQIAAARARQMQRQQGLNAHLGLEGLRTHCRLSDGDGQWLEQAVTRLGLSHRASHRVLKVARTLADLDAAE
QVGRSHLAEALQYRQLDRQPG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=1161839 ACKPCU_RS01200 WP_321349205.1 269362..270867(+) (comM) [MAG: Halopseudomonas oceani isolate ab883223-6a80-4053-bf73-fb395571e785]
ATGTCCCTGGCCACCATCCACAGCCGCGCGCGTCTGGGTATCGATGCGCCGGCCGTCCAGGTCGAAGTCCATCTTGCCAA
CGGCATGCCCAGCCTGACCCTGGTCGGATTACCGGAAACAGCCGTGCGCGAAAGCAAGGACCGGGTGCGCAGCGCGCTAC
TGAACGCACAACTGGAGTTCCCCGGCAGCAAGCGCATTACCATCAGCCTGGCACCTGCCGATCTGCCCAAGGATGGCGGA
CGCTTTGACCTGGCCATCGCGCTTGGCCTGCTGGCCGCGAGCGGGCAGATCCCGGCGCAGGCGCTGGTCGACTGCGAGTG
CATCGGTGAGCTGGCGCTGTCCGGTGAGCTGCGACCGATCCAGGGCGTGCTGCCGGTGGCGCTGGCCTGCCGCGATGCTG
GTCGCAAGCTGATTCTGCCGGCCGCCAACGCGGCCGAGGCCGCACTGGTCAGCGGGATCGAACTGATCGCTGCCGAGCAT
CTGCTGCCGCTGTGCGCACACTTGCGCGGCGAGCAGAGCTTGCCCGACCTCCCGCCGACAGCGCCCTCACAGCCAGCCAG
GCATGCCGACCTCGCCGACGTACAGGGGCAGGAGCAAGCCAAGCGAGCACTGATCATTGCCGCAGCGGGCGGTCACAATC
TCCTGCTGTTCGGGCCTCCGGGAACCGGCAAGACGCTGCTCGCCAGCCGTCTGCCCGGCATCCTGCCACCACTGCAGGAG
CATGAGGCGCTCGAAGTCGCGGCGATCCAATCGGTCTGCGACCGTACGCCCCTGAGCGCCTGGCCAACCCGCCCCTTTCG
CTCGCCCCATCACGGTGCATCGGCCGCAGCGCTGGTTGGCGGCGGCAGCCAGCCTCGGCCAGGCGAAATCAGCCAGGCGC
ATCACGGCGTGCTGTTTCTCGACGAGTTGCCGGAGTTTGACCGCAAGGTGCTGGAGATGCTGCGCGAGCCGCTGGAGTCC
GGCGCCATTCACATCGCCCGGGCACGCGAGCAACTGCGCTTCCCGGCGCGCTTCCAGTTGGTTGCGGCAATGAACCCGTG
CCCTTGTGGGTATCAGGGCGATCCATCCAGCCGCTGTCGCTGCACACCCGAGCAGGTCCAGCGCTACCGAAGCAAGCTGT
CGGGGCCGCTGCTGGACCGCATCGACCTGCATCTGGCAATGCGCAACGAGCCGTTCAGCCTACAGGGCAACAGTGGCCCC
GGCACCCCCGACAGTGCGACCGCCGCGGCGCAGATTGCTGCAGCACGCGCGCGCCAAATGCAGCGCCAGCAGGGGCTGAA
TGCGCATCTCGGGCTGGAGGGGTTGCGTACCCACTGTCGTCTGAGCGACGGCGATGGTCAGTGGCTGGAGCAGGCGGTAA
CCCGACTGGGCCTGTCGCACCGCGCCAGTCATCGGGTATTGAAGGTTGCGCGAACCCTGGCAGACCTGGATGCAGCGGAG
CAGGTAGGCCGGTCGCATCTAGCCGAAGCGTTGCAGTATCGGCAACTGGATCGCCAGCCTGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.89

100

0.549
  comM Vibrio campbellii strain DS40M4

54.2

99.8

0.541
  comM Glaesserella parasuis strain SC1401

52.475

100

0.529
  comM Haemophilus influenzae Rd KW20

51.881

100

0.523
  comM Legionella pneumophila str. Paris

50.2

99.8

0.501
  comM Legionella pneumophila strain ERS1305867

50.2

99.8

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.706

100

0.455

Multiple sequence alignment