Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   U8955_RS09980 Genome accession   NZ_OY769914
Coordinates   1988180..1988842 (-) Length   220 a.a.
NCBI ID   WP_038804758.1    Uniprot ID   A0A7T3E0J0
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1983180..1993842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS09960 (SDENT7746_10010) rplI 1983705..1984157 (-) 453 WP_000864206.1 50S ribosomal protein L9 -
  U8955_RS09965 (SDENT7746_10015) - 1984154..1986127 (-) 1974 WP_038804756.1 DHH family phosphoesterase -
  U8955_RS09970 (SDENT7746_10020) - 1986286..1987464 (-) 1179 WP_038804814.1 acetyl-CoA C-acetyltransferase -
  U8955_RS09975 (SDENT7746_10025) hpf 1987552..1988100 (-) 549 WP_000599119.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U8955_RS09980 (SDENT7746_10030) comFC/cflB 1988180..1988842 (-) 663 WP_038804758.1 ComF family protein Machinery gene
  U8955_RS09985 (SDENT7746_10035) comFA/cflA 1988839..1990137 (-) 1299 WP_038804759.1 DEAD/DEAH box helicase Machinery gene
  U8955_RS09990 (SDENT7746_10040) - 1990194..1990829 (+) 636 WP_038804761.1 YigZ family protein -
  U8955_RS09995 (SDENT7746_10045) cysK 1990985..1991911 (+) 927 WP_038804762.1 cysteine synthase A -
  U8955_RS10000 (SDENT7746_10055) tsf 1992026..1993066 (-) 1041 WP_000808060.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25374.37 Da        Isoelectric Point: 7.7819

>NTDB_id=1161754 U8955_RS09980 WP_038804758.1 1988180..1988842(-) (comFC/cflB) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MNCLLCGQSTKSDLTFSHLLLFKNERNYLCSACDSTFERIGEDHCPSCMKRELSITCQDCKLWCKEGIQVDHKAIFTYNQ
AMKAFFSRYKFDGDFLLRKVFAPVLADELKKYRDYEFVVIPLSPERLLERGFNQVEGLVETAGFSFQDLLGKREEKASSS
KNRSERLATEIPFYIKMEAPLPKKILVIDDIYTTGATINRVKRLFEEAGVLEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1161754 U8955_RS09980 WP_038804758.1 1988180..1988842(-) (comFC/cflB) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGAATTGTTTATTATGTGGCCAGTCAACAAAGAGTGACTTGACATTTAGTCACCTCTTACTGTTTAAGAATGAGCGCAA
CTATCTTTGTTCAGCTTGTGATTCTACTTTTGAGAGGATAGGTGAGGATCATTGTCCGAGCTGCATGAAAAGAGAATTGT
CAATCACGTGTCAAGATTGTAAACTTTGGTGTAAAGAAGGAATTCAGGTTGATCATAAGGCAATCTTCACCTATAATCAA
GCTATGAAAGCCTTTTTTAGTCGATATAAGTTTGATGGGGATTTTCTGCTTAGAAAGGTTTTTGCTCCTGTACTTGCGGA
TGAGTTGAAAAAATATAGAGACTATGAATTTGTGGTAATTCCCCTAAGTCCTGAAAGATTGCTTGAGAGAGGATTTAATC
AGGTTGAAGGTTTGGTTGAGACGGCAGGATTTTCCTTTCAAGATTTACTAGGGAAAAGAGAAGAGAAGGCTAGTTCTTCT
AAGAATCGCTCAGAACGATTAGCTACGGAAATTCCCTTTTATATTAAAATGGAAGCCCCTCTTCCTAAGAAGATTTTGGT
TATTGATGACATCTATACGACAGGGGCGACTATCAATCGTGTGAAGCGACTTTTTGAAGAGGCAGGTGTTTTGGAAGTCA
AAACTTTTTCTCTTGTAAGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3E0J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

75.455

100

0.755
  comFC/cflB Streptococcus mitis NCTC 12261

75

100

0.75
  comFC/cflB Streptococcus pneumoniae TIGR4

74.545

100

0.745
  comFC/cflB Streptococcus pneumoniae Rx1

74.545

100

0.745
  comFC/cflB Streptococcus pneumoniae D39

74.545

100

0.745
  comFC/cflB Streptococcus pneumoniae R6

74.545

100

0.745

Multiple sequence alignment