Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACORJT_RS01195 Genome accession   NZ_OY764955
Coordinates   256976..257614 (-) Length   212 a.a.
NCBI ID   WP_185979093.1    Uniprot ID   -
Organism   MAG: Thiomicrorhabdus sp. isolate 8ea2596c-92a0-4817-a9d0-5c5ca94cf059     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 251976..262614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACORJT_RS01180 (SLU16_RS01180) - 252754..253611 (-) 858 WP_420719607.1 HAD-IIB family hydrolase -
  ACORJT_RS01185 (SLU16_RS01185) - 253614..255794 (-) 2181 WP_420719610.1 HAD family hydrolase -
  ACORJT_RS01190 (SLU16_RS01190) - 256024..256899 (+) 876 WP_319558071.1 HDOD domain-containing protein -
  ACORJT_RS01195 (SLU16_RS01195) ssb 256976..257614 (-) 639 WP_185979093.1 single-stranded DNA-binding protein Machinery gene
  ACORJT_RS01200 (SLU16_RS01200) - 257643..259007 (-) 1365 WP_319558072.1 MFS transporter -
  ACORJT_RS01205 (SLU16_RS01205) - 259213..259905 (+) 693 WP_319558073.1 SIMPL domain-containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23224.58 Da        Isoelectric Point: 5.9073

>NTDB_id=1161674 ACORJT_RS01195 WP_185979093.1 256976..257614(-) (ssb) [MAG: Thiomicrorhabdus sp. isolate 8ea2596c-92a0-4817-a9d0-5c5ca94cf059]
MRGVNKVILVGTLGQDPEVKYAANGNAIANLSVATSEEWNDKNTGQKQQKTEWHRVAIFGKLAEIAGQYLKKGSQVYLEG
KLQTRKWQDQNGQDRYTTEVVLSGFDSNMQMLGGGQRQGDAAFDNAYNQGMPQQPMQNNMSAPQNNYQGGGYQQPMQNRA
PVQNPSRPMQGSPNNVGGYGGAQQPSPQPMGGQPQRAPAYVPNDFDDDDVPF

Nucleotide


Download         Length: 639 bp        

>NTDB_id=1161674 ACORJT_RS01195 WP_185979093.1 256976..257614(-) (ssb) [MAG: Thiomicrorhabdus sp. isolate 8ea2596c-92a0-4817-a9d0-5c5ca94cf059]
ATGCGTGGTGTAAATAAAGTCATTTTAGTCGGAACCCTTGGGCAGGACCCAGAGGTGAAATATGCGGCTAACGGAAATGC
GATTGCCAACCTGAGTGTCGCCACCAGTGAAGAGTGGAACGATAAAAACACCGGGCAAAAGCAGCAGAAAACCGAATGGC
ACCGCGTGGCGATTTTTGGAAAGCTGGCCGAAATTGCCGGACAATATCTGAAAAAAGGTTCTCAGGTTTATCTGGAAGGC
AAACTGCAAACGCGTAAATGGCAGGACCAGAATGGTCAGGATCGCTACACTACCGAAGTGGTGTTAAGCGGCTTCGACAG
CAATATGCAGATGTTGGGCGGCGGCCAGCGTCAAGGCGATGCGGCTTTCGATAACGCATACAACCAGGGGATGCCTCAGC
AGCCGATGCAAAATAATATGTCTGCACCGCAGAACAATTACCAAGGCGGCGGTTATCAACAACCGATGCAGAATCGTGCT
CCGGTGCAAAATCCTTCACGCCCTATGCAGGGTTCGCCAAATAATGTGGGTGGCTACGGTGGAGCTCAGCAGCCAAGTCC
GCAACCGATGGGTGGTCAGCCGCAAAGAGCGCCGGCGTATGTGCCGAATGATTTCGACGACGATGATGTACCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.185

99.528

0.509
  ssb Glaesserella parasuis strain SC1401

48.113

100

0.481
  ssb Neisseria gonorrhoeae MS11

40.952

99.057

0.406
  ssb Neisseria meningitidis MC58

40.476

99.057

0.401

Multiple sequence alignment