Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLMBN_RS00275 Genome accession   NZ_OY760626
Coordinates   53172..54692 (-) Length   506 a.a.
NCBI ID   WP_015880097.1    Uniprot ID   C4LDN7
Organism   MAG: Tolumonas auensis isolate c7031faa-31f6-4012-988d-549758c2b37d     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 48172..59692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBN_RS00255 (U2939_RS00255) - 48980..49339 (-) 360 WP_015880093.1 DMT family protein -
  ACLMBN_RS00260 (U2939_RS00260) - 49551..50978 (+) 1428 WP_411354414.1 alkaline phosphatase -
  ACLMBN_RS00265 (U2939_RS00265) - 51000..52373 (+) 1374 WP_321408012.1 alkaline phosphatase -
  ACLMBN_RS00270 (U2939_RS00270) - 52448..53134 (+) 687 WP_321408014.1 hypothetical protein -
  ACLMBN_RS00275 (U2939_RS00275) comM 53172..54692 (-) 1521 WP_015880097.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLMBN_RS00280 (U2939_RS00280) - 54840..56189 (-) 1350 WP_321408018.1 gluconate:H+ symporter -
  ACLMBN_RS00285 (U2939_RS00285) - 56268..58235 (-) 1968 WP_321408020.1 YjhG/YagF family D-xylonate dehydratase -
  ACLMBN_RS00290 (U2939_RS00290) - 58251..59159 (-) 909 WP_321408023.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54973.09 Da        Isoelectric Point: 7.3219

>NTDB_id=1161499 ACLMBN_RS00275 WP_015880097.1 53172..54692(-) (comM) [MAG: Tolumonas auensis isolate c7031faa-31f6-4012-988d-549758c2b37d]
MSLAVVYSRASLGIDAPLVSVEVHLSNGLPAFNMVGLPEASVKESRDRVRSALINGNFEFPAKRITVNLAPADLPKEGGR
FDLAIALGILAASGQIPDQLLAEYEFLGELALTGDVRSVLGVLPAVLAAGRAGRTLVVPRMNGAEASLIQQYRAYLSDSL
LQVCGWLAGEQALPVAESVAGEADLTPVADLQDVIGQQTGKRALEIAASGQHHLLFMGPPGTGKSMLASRLPGILPEMSD
EEAQQTAALHSIGGLNPGKVNWKLRPFRSPHHSASSVALVGGGSKPRPGEISLAHNGVLFMDELTEFERRTLDSLREPLE
TGHITISRAARQMEFPSRFQLIAAMNPSPCGHLDDQQRASPEQVLRYLGKLSGPFLDRFDLTVEIPLLPKGSLSQKAERG
ESSADIRARVMATRERQFARSGKLNAMLESREIERDCALLTEDAQFLENAIHKLGLSLRAWHKLLKVSRTIADIAGEPQI
QRQHLIEALGYRAMDRLFQRLKTQRF

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1161499 ACLMBN_RS00275 WP_015880097.1 53172..54692(-) (comM) [MAG: Tolumonas auensis isolate c7031faa-31f6-4012-988d-549758c2b37d]
ATGTCACTTGCCGTTGTCTATAGCCGTGCCAGTCTGGGCATTGATGCCCCTTTAGTTTCTGTCGAAGTTCATCTCAGTAA
TGGTTTACCGGCGTTTAATATGGTCGGGCTACCAGAAGCGTCGGTGAAAGAATCGCGTGATCGGGTGCGCAGTGCGCTGA
TCAACGGTAATTTCGAATTTCCTGCCAAACGGATCACCGTCAATCTGGCGCCGGCCGATTTGCCGAAGGAGGGCGGCCGG
TTCGATCTAGCGATTGCGCTGGGTATTCTGGCGGCTTCCGGGCAGATCCCGGATCAGTTACTGGCGGAGTATGAGTTTTT
AGGTGAACTGGCATTAACTGGCGATGTGCGTTCGGTGTTAGGGGTGTTGCCGGCGGTATTAGCTGCCGGACGGGCCGGGC
GCACACTGGTGGTACCGCGCATGAATGGCGCGGAAGCCAGCCTGATCCAGCAATACCGGGCATATCTGAGTGATTCCTTG
CTGCAGGTCTGTGGCTGGCTGGCCGGAGAACAGGCGTTGCCGGTAGCCGAAAGTGTGGCCGGTGAAGCGGACTTAACGCC
GGTGGCAGATCTGCAGGATGTGATTGGTCAGCAGACCGGCAAGCGGGCGCTGGAAATCGCGGCCAGCGGGCAACATCATC
TGCTGTTTATGGGGCCGCCGGGTACCGGGAAAAGTATGCTGGCGAGCCGTCTGCCGGGTATTTTGCCGGAAATGAGCGAT
GAAGAGGCGCAGCAAACCGCGGCCCTGCATTCGATTGGTGGCCTTAACCCCGGCAAGGTGAACTGGAAACTCCGGCCGTT
CCGCTCACCGCATCACAGTGCTTCTTCCGTGGCGCTGGTGGGAGGCGGCAGTAAACCCCGTCCCGGCGAGATTTCGCTGG
CGCATAACGGGGTGTTGTTTATGGATGAACTCACGGAGTTTGAACGCAGAACACTGGATTCCCTGCGTGAGCCACTGGAG
ACCGGACATATCACCATCTCCCGTGCCGCCCGGCAGATGGAGTTTCCGTCGCGTTTTCAGCTGATTGCCGCGATGAATCC
GAGTCCGTGCGGGCATCTGGATGATCAGCAGCGGGCCAGTCCGGAGCAGGTGCTGCGTTATCTGGGCAAACTCTCCGGCC
CGTTTCTCGATCGCTTTGATTTAACGGTGGAAATCCCGCTGTTGCCGAAAGGCAGCCTCAGCCAGAAAGCGGAACGCGGC
GAGAGCAGTGCGGACATCCGGGCGCGGGTGATGGCAACCCGCGAGCGGCAGTTCGCCCGCAGCGGGAAACTGAATGCGAT
GCTGGAGAGCCGCGAGATTGAGCGGGATTGTGCTTTGCTCACCGAAGACGCGCAGTTTCTGGAAAATGCTATTCACAAGT
TAGGTTTGTCGTTGCGGGCGTGGCACAAGCTGCTGAAGGTCTCACGCACCATTGCCGATATTGCCGGCGAGCCGCAGATC
CAGCGGCAGCATCTGATCGAGGCACTGGGTTACCGGGCGATGGATCGGTTGTTTCAGCGGCTGAAAACACAGCGTTTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C4LDN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.564

99.802

0.634
  comM Glaesserella parasuis strain SC1401

62.13

100

0.623
  comM Vibrio campbellii strain DS40M4

61.782

99.802

0.617
  comM Haemophilus influenzae Rd KW20

61.265

100

0.613
  comM Legionella pneumophila str. Paris

51.703

98.617

0.51
  comM Legionella pneumophila strain ERS1305867

51.703

98.617

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.75

100

0.443

Multiple sequence alignment