Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACORJQ_RS00450 Genome accession   NZ_OY759719
Coordinates   116169..117710 (-) Length   513 a.a.
NCBI ID   WP_321325024.1    Uniprot ID   -
Organism   MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 111169..122710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACORJQ_RS00430 (U2926_RS00430) - 111727..113106 (+) 1380 WP_321325020.1 HlyD family type I secretion periplasmic adaptor subunit -
  ACORJQ_RS00435 (U2926_RS00435) - 113201..113794 (+) 594 WP_321325021.1 response regulator transcription factor -
  ACORJQ_RS00440 (U2926_RS00440) - 113867..115207 (+) 1341 WP_321325022.1 TolC family outer membrane protein -
  ACORJQ_RS00445 (U2926_RS00445) - 115483..116169 (-) 687 WP_321325023.1 sulfite exporter TauE/SafE family protein -
  ACORJQ_RS00450 (U2926_RS00450) comM 116169..117710 (-) 1542 WP_321325024.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACORJQ_RS00455 (U2926_RS00455) - 117721..117972 (-) 252 WP_321325025.1 accessory factor UbiK family protein -
  ACORJQ_RS00460 (U2926_RS00460) - 118158..119222 (+) 1065 WP_321325026.1 GGDEF domain-containing protein -
  ACORJQ_RS00465 (U2926_RS00465) - 119336..120025 (-) 690 WP_321325027.1 SPOR domain-containing protein -
  ACORJQ_RS00470 (U2926_RS00470) argS 120026..121792 (-) 1767 WP_321325028.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 55898.92 Da        Isoelectric Point: 6.3240

>NTDB_id=1161442 ACORJQ_RS00450 WP_321325024.1 116169..117710(-) (comM) [MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab]
MLVASLYTRAVLGMDSPQVVVEVHASNGLPSFSIVGLPEASVKESKDRVRSAIISSGFKLPPKRITVNLAPADLPKSGGR
YDLPIAIGILLATEQLNINNIADFELFGELALTGELRSINGAISSLLASYSSNKKILLPLSNINEARLLVQTYPELKSNL
FLVNDLREACQVLMGQVAAKNIDTELILKPGNDNHYAQDLSEVRGQLQAKRALEIAASGHHSMMMVGPPGSGKSMLASRL
ITILPDLTSDEAIEVANIRSISGQQIEQDSFYSRPFIHPHHTASAAAMVGGGSTPKPGALSLAHNGVLFLDELPEFNRAV
LEALREPLETKSVNISRVNQHVSYPANSLLITAMNPSPSGFFADDPLGRCKDTPDQIIRYQKKISGPLMDRIDVHIEVPA
VDIVDLQNHSQTQEETSAVVKQRVTDVRAFQLERQGCFNSELSSNELNELAKLDTVEQAFMEKAVTGLGLSARGYHRVLR
LSRTIADMQADNQIKIEHLAEALSYRTTSKVFM

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=1161442 ACORJQ_RS00450 WP_321325024.1 116169..117710(-) (comM) [MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab]
ATGTTAGTTGCCAGTCTTTATACGCGAGCAGTTTTGGGGATGGATTCTCCCCAAGTCGTTGTGGAGGTGCACGCGAGTAA
TGGTTTGCCTTCTTTTTCTATTGTAGGGCTGCCAGAGGCATCTGTTAAAGAGAGTAAAGATAGGGTAAGGAGCGCCATAA
TTAGCTCAGGTTTTAAATTGCCTCCTAAGCGTATTACGGTGAACCTTGCTCCTGCGGATCTGCCAAAATCGGGCGGCCGT
TATGATTTGCCTATTGCTATTGGCATACTACTAGCCACTGAGCAACTTAATATTAATAATATTGCCGACTTTGAGTTGTT
TGGTGAGTTAGCTTTAACAGGCGAACTTCGCAGTATAAACGGGGCTATTTCAAGTCTATTAGCATCCTATTCATCTAATA
AAAAAATCCTCCTACCTCTCTCTAATATCAATGAAGCAAGGCTTTTAGTACAAACCTATCCCGAGCTTAAAAGTAATCTG
TTTTTGGTTAATGACCTTAGAGAGGCTTGCCAAGTTTTAATGGGGCAGGTTGCCGCAAAAAATATTGATACTGAGTTGAT
TCTTAAACCTGGCAACGATAATCATTATGCTCAAGACTTGTCTGAGGTGAGAGGGCAGTTGCAGGCAAAAAGGGCATTAG
AAATTGCCGCAAGTGGCCATCACTCAATGATGATGGTGGGACCACCTGGCTCGGGTAAAAGTATGTTAGCATCACGTTTG
ATAACGATACTGCCTGATTTAACTTCTGATGAAGCTATTGAGGTTGCTAATATTCGCTCAATTTCAGGGCAACAAATAGA
ACAAGATTCTTTTTATTCACGTCCTTTTATTCACCCGCATCATACGGCTTCAGCGGCTGCAATGGTGGGAGGTGGTTCAA
CGCCTAAACCAGGAGCTTTGTCTTTGGCACATAACGGTGTTTTGTTTTTAGACGAGTTACCAGAGTTTAACCGTGCCGTA
CTTGAGGCTTTAAGAGAACCTTTGGAGACTAAATCGGTAAATATTTCTAGAGTAAATCAGCATGTTAGTTATCCTGCCAA
CAGTTTGCTTATTACCGCCATGAACCCTTCTCCTAGTGGTTTTTTTGCCGACGACCCTTTGGGACGTTGCAAAGACACTC
CTGATCAAATTATACGATATCAAAAAAAGATTTCTGGACCTTTAATGGATCGTATTGATGTGCATATTGAAGTGCCGGCT
GTAGACATTGTGGATTTGCAAAATCATTCACAAACTCAAGAAGAAACGAGTGCAGTTGTAAAACAACGAGTGACTGATGT
AAGAGCGTTCCAGCTTGAAAGACAGGGTTGTTTTAATTCTGAGTTAAGTTCAAACGAATTAAATGAATTAGCCAAGCTGG
ATACCGTTGAACAAGCTTTTATGGAAAAGGCCGTTACAGGCTTAGGATTGTCTGCTAGAGGCTACCATCGAGTGTTGCGT
TTGTCTCGCACTATTGCAGATATGCAGGCGGATAATCAAATTAAGATTGAACACCTGGCAGAAGCATTAAGTTATCGAAC
AACCTCTAAGGTATTTATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-402)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

48.35

100

0.485
  comM Glaesserella parasuis strain SC1401

47.368

100

0.474
  comM Vibrio cholerae strain A1552

46.394

100

0.464
  comM Legionella pneumophila strain ERS1305867

45.866

99.025

0.454
  comM Legionella pneumophila str. Paris

45.866

99.025

0.454
  comM Vibrio campbellii strain DS40M4

44.922

99.805

0.448
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.811

100

0.423

Multiple sequence alignment