Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MARPU_RS00485 Genome accession   NZ_CP007031
Coordinates   100392..101912 (+) Length   506 a.a.
NCBI ID   WP_005222054.1    Uniprot ID   -
Organism   Marichromatium purpuratum 984     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 95392..106912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARPU_RS00460 (MARPU_00455) - 95867..97120 (-) 1254 WP_005222059.1 ammonium transporter -
  MARPU_RS00465 (MARPU_00460) - 97213..98520 (-) 1308 WP_043762374.1 ammonium transporter -
  MARPU_RS00470 (MARPU_00465) - 98556..98894 (-) 339 WP_005222057.1 P-II family nitrogen regulator -
  MARPU_RS00475 (MARPU_00470) - 98968..99690 (-) 723 WP_005222056.1 TorF family putative porin -
  MARPU_RS00480 (MARPU_00475) ubiK 100107..100373 (+) 267 WP_005222055.1 ubiquinone biosynthesis accessory factor UbiK -
  MARPU_RS00485 (MARPU_00480) comM 100392..101912 (+) 1521 WP_005222054.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MARPU_RS00490 (MARPU_00485) - 101975..103873 (+) 1899 WP_005222053.1 ATP-binding cassette domain-containing protein -
  MARPU_RS00495 (MARPU_00490) - 103890..104432 (+) 543 WP_005222052.1 DUF2939 domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53207.21 Da        Isoelectric Point: 7.9667

>NTDB_id=116084 MARPU_RS00485 WP_005222054.1 100392..101912(+) (comM) [Marichromatium purpuratum 984]
MALCTLHSRACVGISAPAVTVEVHLSSGLPALSLVGLPEAAVRESKERVRGALLNARFRFPDGRLTINLAPADLPKEGGR
FDLPIALGILGASGQLGAAGLDDCECLGELALSGALRPVTGVIPAALAARAAGRTLILPRANAEEAALVGGLELLPAEHL
GEVCEHLAGVRALRPHPQGGEIVTAPTGADLREVRGQAQAKRALEVAAAGGHSLLLIGPPGSGKSMLASRLPGLLPPLSE
DEALESAAIRSVSASTPFDPVRWRERPFRAPHHTASAVALVGGGGNPRPGEISLAHHGVLFLDELPEFDRRVLEVLREPL
ESGHIDISRAARQARFPARFQLVAAMNPCPCGYLGDPGGRCHCSREQVARYRARISGPLIDRIDLQLEVPRVELGALLAP
SAPQAEDSATVRARVCAARERQQHRAGCANAALDTAGLERDCALEAAGVRMMEQAMARLGLSARAYHRVLKVARTIADLE
GAPRIAPAHLGEAIGYRRLDRAAERP

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=116084 MARPU_RS00485 WP_005222054.1 100392..101912(+) (comM) [Marichromatium purpuratum 984]
TTGGCGCTCTGCACCCTGCACAGCCGCGCCTGCGTGGGCATCTCGGCCCCGGCGGTCACCGTCGAGGTCCATCTCTCCTC
GGGACTGCCGGCGTTGTCGTTGGTGGGGTTGCCCGAGGCTGCGGTGCGCGAGAGCAAGGAGCGGGTACGCGGAGCGCTGC
TCAATGCCCGCTTCCGCTTCCCCGACGGTCGCCTGACCATCAATCTCGCTCCCGCCGACCTGCCCAAGGAAGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGTATCCTCGGTGCCTCGGGACAGCTCGGTGCCGCCGGGCTCGATGACTGCGAGTGTCT
CGGCGAGCTGGCGCTCTCCGGCGCGCTGCGCCCGGTCACCGGGGTGATCCCCGCGGCGCTGGCCGCGCGCGCGGCTGGAC
GCACCCTGATCCTGCCGCGCGCCAATGCCGAGGAGGCGGCGCTGGTCGGCGGGCTCGAGCTGCTCCCGGCCGAGCATCTC
GGCGAGGTCTGTGAGCATCTCGCCGGGGTGCGTGCGCTGAGGCCGCACCCGCAGGGGGGCGAGATCGTCACCGCGCCGAC
TGGCGCCGATCTCCGCGAGGTGCGCGGTCAGGCGCAGGCCAAGCGGGCGCTTGAGGTCGCCGCCGCCGGCGGCCACAGCC
TGCTGCTGATCGGCCCGCCGGGCAGCGGCAAGTCGATGCTGGCGAGCCGGCTGCCGGGGTTGTTGCCGCCGTTGAGCGAG
GACGAGGCGCTGGAGAGCGCGGCGATCCGCTCGGTGAGCGCCAGCACGCCGTTCGATCCGGTGCGCTGGCGCGAGCGACC
GTTCCGCGCCCCGCATCACACCGCCTCGGCGGTGGCCCTGGTCGGCGGTGGGGGCAACCCGCGTCCGGGCGAGATCTCGC
TGGCGCATCACGGGGTGCTGTTCCTCGACGAGCTGCCGGAGTTTGACCGGCGGGTGCTGGAGGTGCTGCGCGAGCCGCTG
GAGTCGGGTCATATCGACATCTCGCGGGCGGCGCGTCAGGCACGCTTCCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAA
CCCCTGCCCCTGCGGTTATCTCGGCGACCCCGGTGGACGCTGTCACTGCAGTCGCGAGCAGGTCGCGCGCTATCGCGCGC
GGATCTCGGGGCCGCTGATCGATCGCATCGACCTGCAGCTCGAGGTGCCGCGGGTCGAACTCGGCGCGTTGCTCGCGCCC
TCGGCCCCGCAGGCCGAGGACTCGGCGACGGTGCGCGCGCGGGTGTGCGCGGCGCGTGAGCGCCAGCAGCACCGCGCCGG
GTGCGCCAACGCCGCGCTCGATACCGCTGGCCTCGAGCGCGACTGCGCGCTCGAGGCCGCGGGGGTACGGATGATGGAGC
AGGCGATGGCCAGACTGGGGCTCTCGGCGCGCGCTTATCACCGGGTGCTCAAGGTCGCGCGCACCATCGCCGACCTGGAG
GGCGCGCCGCGGATCGCCCCGGCCCATCTCGGCGAGGCGATCGGCTATCGCCGTCTCGACCGCGCCGCCGAGCGGCCCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.491

99.012

0.54
  comM Vibrio cholerae strain A1552

54.491

99.012

0.54
  comM Haemophilus influenzae Rd KW20

52.93

100

0.536
  comM Glaesserella parasuis strain SC1401

52.165

100

0.524
  comM Legionella pneumophila str. Paris

50.602

98.419

0.498
  comM Legionella pneumophila strain ERS1305867

50.602

98.419

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.451

100

0.478

Multiple sequence alignment