Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QPK16_RS04760 Genome accession   NZ_OX638610
Coordinates   1017801..1019294 (-) Length   497 a.a.
NCBI ID   WP_049308005.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 3541 isolate 3541     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1012801..1024294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK16_RS04745 (JCHGIK_06075) - 1013597..1014514 (+) 918 WP_003098255.1 LysR substrate-binding domain-containing protein -
  QPK16_RS04750 (JCHGIK_06080) pchP 1014665..1015714 (+) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  QPK16_RS04755 (JCHGIK_06085) - 1015757..1017676 (-) 1920 WP_086222839.1 BCCT family transporter -
  QPK16_RS04760 (JCHGIK_06090) comM 1017801..1019294 (-) 1494 WP_049308005.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QPK16_RS04765 (JCHGIK_06095) - 1019335..1019595 (-) 261 WP_003096478.1 accessory factor UbiK family protein -
  QPK16_RS04770 (JCHGIK_06100) glnK 1020035..1020373 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  QPK16_RS04775 (JCHGIK_06105) - 1020413..1021741 (+) 1329 WP_003098243.1 ammonium transporter -
  QPK16_RS04780 (JCHGIK_06110) - 1022002..1022427 (+) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QPK16_RS04785 (JCHGIK_06115) sutA 1022505..1022822 (+) 318 WP_003098240.1 transcriptional regulator SutA -
  QPK16_RS04790 (JCHGIK_06120) - 1023246..1024160 (+) 915 WP_029610554.1 fimbrial protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53117.06 Da        Isoelectric Point: 7.9587

>NTDB_id=1160159 QPK16_RS04760 WP_049308005.1 1017801..1019294(-) (comM) [Pseudomonas aeruginosa strain 3541 isolate 3541]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTAFDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1160159 QPK16_RS04760 WP_049308005.1 1017801..1019294(-) (comM) [Pseudomonas aeruginosa strain 3541 isolate 3541]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCTTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.99

100

0.565
  comM Vibrio campbellii strain DS40M4

56.539

100

0.565
  comM Vibrio cholerae strain A1552

56.137

100

0.561
  comM Glaesserella parasuis strain SC1401

54.98

100

0.555
  comM Legionella pneumophila str. Paris

49.9

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.469

Multiple sequence alignment