Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QRQ54_RS31115 Genome accession   NZ_OX638564
Coordinates   6691630..6693123 (+) Length   497 a.a.
NCBI ID   WP_049308005.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 3796A isolate 3796A     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 6686630..6698123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRQ54_RS31085 (PAE3796A_30940) - 6686764..6687678 (-) 915 WP_029610554.1 fimbrial protein -
  QRQ54_RS31090 (PAE3796A_30945) sutA 6688102..6688419 (-) 318 WP_003098240.1 transcriptional regulator SutA -
  QRQ54_RS31095 (PAE3796A_30950) - 6688497..6688922 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QRQ54_RS31100 (PAE3796A_30955) - 6689183..6690511 (-) 1329 WP_003098243.1 ammonium transporter -
  QRQ54_RS31105 (PAE3796A_30960) glnK 6690551..6690889 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  QRQ54_RS31110 (PAE3796A_30965) - 6691329..6691589 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  QRQ54_RS31115 (PAE3796A_30970) comM 6691630..6693123 (+) 1494 WP_049308005.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QRQ54_RS31120 (PAE3796A_30975) - 6693248..6695167 (+) 1920 WP_086222839.1 BCCT family transporter -
  QRQ54_RS31125 (PAE3796A_30980) pchP 6695210..6696259 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  QRQ54_RS31130 (PAE3796A_30985) - 6696410..6697327 (-) 918 WP_003098255.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53117.06 Da        Isoelectric Point: 7.9587

>NTDB_id=1160148 QRQ54_RS31115 WP_049308005.1 6691630..6693123(+) (comM) [Pseudomonas aeruginosa strain 3796A isolate 3796A]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTAFDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1160148 QRQ54_RS31115 WP_049308005.1 6691630..6693123(+) (comM) [Pseudomonas aeruginosa strain 3796A isolate 3796A]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCTTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.99

100

0.565
  comM Vibrio campbellii strain DS40M4

56.539

100

0.565
  comM Vibrio cholerae strain A1552

56.137

100

0.561
  comM Glaesserella parasuis strain SC1401

54.98

100

0.555
  comM Legionella pneumophila str. Paris

49.9

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.469

Multiple sequence alignment