Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QOY19_RS04090 Genome accession   NZ_OX595791
Coordinates   767376..768323 (+) Length   315 a.a.
NCBI ID   WP_111695098.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 762376..773323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOY19_RS04065 - 762724..763404 (+) 681 WP_000656582.1 VIT family protein -
  QOY19_RS04070 - 763555..764256 (+) 702 WP_001263956.1 glucosamine-6-phosphate deaminase -
  QOY19_RS04075 - 764328..765284 (-) 957 WP_000523788.1 glutathione S-transferase C-terminal domain-containing protein -
  QOY19_RS04080 - 765380..766099 (+) 720 WP_001234956.1 pseudouridine synthase -
  QOY19_RS04085 - 766172..767324 (+) 1153 Protein_723 MFS transporter -
  QOY19_RS04090 coiA 767376..768323 (+) 948 WP_111695098.1 competence protein CoiA family protein Machinery gene
  QOY19_RS04095 pepF 768339..770144 (+) 1806 WP_001282902.1 oligoendopeptidase F Regulator
  QOY19_RS04100 - 770339..770965 (+) 627 WP_000736935.1 HAD hydrolase-like protein -
  QOY19_RS04105 - 771039..771746 (+) 708 WP_000250853.1 O-methyltransferase -
  QOY19_RS04110 prsA 771807..772736 (+) 930 WP_000857822.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37837.60 Da        Isoelectric Point: 9.5842

>NTDB_id=1159925 QOY19_RS04090 WP_111695098.1 767376..768323(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-270]
MLIAKDKQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFTHISLKNCQFYHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1159925 QOY19_RS04090 WP_111695098.1 767376..768323(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-270]
ATGTTAATTGCTAAAGACAAACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAGGCAGGTCGAATCATGAGAAGACACTTTACACATATTAGTCTAAAAAATTGTC
AGTTTTATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTGACCCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTAGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

48.734

100

0.489
  coiA Streptococcus pneumoniae Rx1

48.734

100

0.489
  coiA Streptococcus pneumoniae D39

48.734

100

0.489
  coiA Streptococcus pneumoniae R6

48.734

100

0.489
  coiA Streptococcus mitis NCTC 12261

48.734

100

0.489
  coiA Lactococcus lactis subsp. cremoris KW2

39.752

100

0.406

Multiple sequence alignment