Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QOT06_RS01755 Genome accession   NZ_OX461117
Coordinates   403643..405169 (-) Length   508 a.a.
NCBI ID   WP_011848081.1    Uniprot ID   A3D9U5
Organism   Shewanella baltica strain SF1039 isolate SF1039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 405771..408809 403643..405169 flank 602


Gene organization within MGE regions


Location: 403643..408809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOT06_RS01755 comM 403643..405169 (-) 1527 WP_011848081.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QOT06_RS01760 - 405771..406787 (-) 1017 WP_283627516.1 IS110-like element ISSba19 family transposase -
  QOT06_RS01765 - 407003..407641 (-) 639 WP_283627517.1 hypothetical protein -
  QOT06_RS01770 - 407688..408809 (+) 1122 WP_259484475.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55467.79 Da        Isoelectric Point: 8.3615

>NTDB_id=1159810 QOT06_RS01755 WP_011848081.1 403643..405169(-) (comM) [Shewanella baltica strain SF1039 isolate SF1039]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRSPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKRARELQLARSGVLNSELTGKQLKRFSGISDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1159810 QOT06_RS01755 WP_011848081.1 403643..405169(-) (comM) [Shewanella baltica strain SF1039 isolate SF1039]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCTCCCCAAGTCACAGTTGAAGTGCATCTAAGTAA
CGGCTTACCGGCATTTAATCTAGTAGGATTACCCGAAGCGTCGGTAAAAGAAGCCCGCGAGCGGGTGCGCAGCGCACTGA
TCAATGCGGGATTCGAGTTTCCGATGCGGCGGATAACCGTTAACCTTGCGCCAGCAGATTTACCTAAACAAGGTGGCCGC
TACGATTTACCCATAGCCGTGGGCATATTGGCCGCCTCGGAACAAATCCCTGCTAATAGTTTAAAAAATCTTGAGTTTGT
CGGCGAGTTAGCACTGTCTGGACACATACGTTATTGCCAAGGATTATTACCCGCGATTATCGCCGCTAAGCGCCAAGACC
ATACCTTAATATTGCCGCTGGATAATCGCCACGATGCCGAGCTAGTCGGCTATCCAAATGTGTTGTTTGGCTCGCACCTT
CAAAGTCTGGCCGCCTATTTACAGGGGCAAAACCAACTGCCGACGTTAGCGCCGCAATTAGAATGGATAAGCCAAGAGAC
GCCTGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCGGCGGGAA
ACCATAACCTCCTGATGCTTGGCCCGCCAGGTACGGGCAAAACCATGCTTGCCAGCCGCATGATGGCGCTATTGCCTGCG
CTTAATTATGAGGAAGCATTAGAAGTCGCGGCGATTCATTCCGTTGCCGGACTCGACATTAAGCCGCAGCATTTTTTGCA
GCGACCCTTTCGCTCGCCACACCACACAAGTTCATCGATATCCCTCGTGGGTGGCGGCAGTATCCCCAAACCCGGTGAAA
TTTCCCTCGCCCACCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCTCGGAAAGTCTTAGATTGCCTGCGCGAG
CCGATGGAGACCGGCGAAGTGGTGATTTCCCGCGCAGCCGCTAAGCTGACATTTTTGAGTCGCTTCCAACTAATCGCGGC
GATGAACCCCAGCCCGAGCGGTGATATCGATAGCCAACACAGATCGAGCCCCGAACAGATTCAACGTTATCTTTCACGGC
TTTCTGGCCCGTTTCTCGACCGCTTCGATTTAACCATTGAAGTGCCCAAACTCCCCGCGGGTACCTTGACTCAAGCCGCG
CCGCAAACAGAAACCAGCCAAGATATCGCCAAGCGGGTGAAACGGGCGCGTGAGCTGCAACTCGCCCGTTCAGGCGTACT
CAATAGCGAGCTCACAGGGAAGCAATTGAAACGCTTTAGCGGGATCAGTGATGCTGATTTAGTGTTTTTGGAACAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGCTTTCACCGTATACAAAGAGTCGCGCGTACTATTGCCGATCTGGAACAAGTG
CCTAACACGGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCTATGGATAGATTACTCGCCCGCTTATCGCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3D9U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.667

100

0.569
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Haemophilus influenzae Rd KW20

56.102

100

0.561
  comM Vibrio campbellii strain DS40M4

55.403

100

0.555
  comM Legionella pneumophila str. Paris

45.866

100

0.459
  comM Legionella pneumophila strain ERS1305867

45.866

100

0.459
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.952

97.638

0.429

Multiple sequence alignment